| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0069 |
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| Symbol | dapD |
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| ID | 5320896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 77087 |
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| End bp | 77944 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640789000 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001325764 |
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| Protein GI | 150395297 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.364204 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAACC ACGACCTCGC CTCCCTGTCG CAGACGATCG AGACCGCCTT CGAAAATCGC
GATGCCGTCA ATACCGGCAC CCGCGGCGCG GTTCGCGATG CCGTGGAAGC GGCACTGAAC
CTGCTCGACA GCGGCAAGGT ACGTGTCGCC GAACGCGCTG CGGACGGGAC CTGGACCGTC
AACCAGTGGC TCAAGAAGGC GGTACTCCTC TCCTTTCGTC TCAATCCGAT GGAACTCGTC
AGAGGCGGGC CGGGCGAAGC CGTCTGGTGG GACAAGGTTG CCTCCAAGTT CGACGGCTGG
AGCGTCAACG AGTTCGAGAA GGCCGGGTTC CGCGCCGTTC CGAACTGCGT TGTCCGCCGC
TCGGCCTATA TCGCGCCGAA TGCGGTCCTA ATGCCCTCCT TCGTCAATCT CGGCGCCTAT
GTCGGCGAGG GAACGATGGT CGACACCTGG GCGACCGTCG GCTCCTGCGC ACAGATCGGC
AAGAACGTGC ATCTTTCGGG CGGCGTCGGC ATCGGCGGCG TGCTTGAGCC GATGCAGGCC
GGTCCGACCA TCATCGAGGA CAATTGCTTC ATCGGTGCGC GCTCCGAGGT GGTCGAGGGC
TGCATCGTGC GCGAGGGTTC GGTGCTCGGC ATGGGCGTCT TCATCGGCAA GTCGACGAAG
ATCGTCGACC GGGCGACGGG TGAGGTGATG TACGGCGAGG TGCCGCCCTA TTCCGTCGTC
GTGGCAGGCT CCATGCCCTC CGGTTCCGCC ATGGGCAACG GCCAGCCGGC TCCGAACCTC
TATTGCGCCG TCATCGTCAA ACGGGTCGAC GAGAAGACCC GCTCCAAGAC CGGCATCAAC
GAACTGCTCC GGGACTGA
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| Protein sequence | MTNHDLASLS QTIETAFENR DAVNTGTRGA VRDAVEAALN LLDSGKVRVA ERAADGTWTV
NQWLKKAVLL SFRLNPMELV RGGPGEAVWW DKVASKFDGW SVNEFEKAGF RAVPNCVVRR
SAYIAPNAVL MPSFVNLGAY VGEGTMVDTW ATVGSCAQIG KNVHLSGGVG IGGVLEPMQA
GPTIIEDNCF IGARSEVVEG CIVREGSVLG MGVFIGKSTK IVDRATGEVM YGEVPPYSVV
VAGSMPSGSA MGNGQPAPNL YCAVIVKRVD EKTRSKTGIN ELLRD
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