| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0057 |
|---|
| Symbol | |
|---|
| ID | 5320884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 59712 |
|---|
| End bp | 61664 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640788988 |
|---|
| Product | putative Chase2 sensor protein |
|---|
| Protein accession | YP_001325752 |
|---|
| Protein GI | 150395285 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4252] Predicted transmembrane sensor domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00712657 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCCT CTCGCCAGCT TCGCCTTTCC TCCCGGCGGG CAAAGCTTGC CGCCCTGGCG
GCCTTGGTAG CCGCCCTCGT CTCGCTCGTC TCGCTGACCG GTTCCTGGTC GCTCGTTGAC
CTGCGCGCCT ACGACTATCT CTCGATCCTC GGCCGGCCAA ACCTTCCGGA GGACGGCCCC
GTTATCGTCG CGATCGACGA ACCGTCGATG GCCGAGATCG GCAGCCAATG GCCCTGGCCG
CGCGCTCTGC ACGCCCGGCT GATCCAGTCG CTGAGGGCCG CCGGCGCCAG AGCGGTCGCT
CTCGACGTGA TCTTCGCCGA ACCGGCCGCC GCGCCGGAGA ACGATCGCGC GCTCGCCGAA
GTCCTGGGAC CCGATGTGGT GCTTGCCGGC GACGAGACGC TGATCCGGAC GCCTCAGGCC
GAGCAGTTCG TCCGGACCGA GCCCCTGCCC GTTTTTCTGG AACGCGGCGC CAAGGTGGGC
GTCGCTTCGG TCACTCTCAG CGGCGACGGC ATACTCAGGC AGATCCCCTC CTATTCGGAC
GGCTTCGCGA CGACGATTGC AAGTGTCGCC GGAGCGGATT TGGCGCGGCC GCCGGGAAGA
GCCCTGATGC AGACCTTCGG ACCGGCACGG ACCTATCCGA CCGTTTCCTA TTACCAGGCG
CTCGATCCCG AGGCTTTCCT TCCGGAAGGG ACGTTTCGCG ACCGGATCGT CATCGTCGGT
CTCAGCCTGC AGAATGCGCC GTCCATCGCG GGCGGCGGCA TCGATGCCTT CGCCACGTCC
GATACGGTCT TCTCGCGCGG ACGCGTCGCC GGTGCCGAAA TTCATGCGAC GATTTACGAC
AATCTCGTGC ACCGGCTGTT CGTCGAACAG GCCGGAGTGA CGGTTGCCAT CGCAGCGATC
ATCCTTGCCA CCCTCGCCGC ATCGCTTGCC GTTTTGAGAT CGACGAGCTG GAAGACGCTC
GGTTACGGCG CTCTCGCTCT CGCCTCGATT TTCCTTGCAA GCTACGCACT CATGCGCCTC
GGCCATGTCT TCGTCTCGCC GCTTGCCCCG GCGCTTGCTT TCGTCGGCGT AGCCGTCGGG
CAGGCCGGCC TCGATTACGC GGAAGAAAGG CGCCGCCGCC GCGAGATCAC GCGCGCCTTC
TCGCAATATC TATCCCCCGC GCTGGTGGAG CGCCTGGCAA GCGACCCTTC GCAGCTGAAG
CTGGGCGGCG AAAGGCGGAC GCTCACGGTC CTATTCTGCG ACGTTCGTGG CTTCACCACG
ATTTCGGAGG ACATGAAGGA TGATCCGGAG GGCCTGACAA CGCTGATCAA CCGGCTTCTG
ACACCCCTTT CGGAAGCCGT GCTCAACCGG CGCGGCACAA TCGACAAATA TATCGGCGAC
TGCCTGATGG CCTTCTGGAA CGCACCTCTC GACGATCCGG ACCATGCCGT CCATGCGGTT
CAGGCGGCGC GCGACATGCT CGCCGCGCTC GCCAAGCTCA ATGCCGAGCT GGAAGCCGAA
GCGAAAGCGG CGGGACGCCC ACCCAAGACG CTCAGGATCG GAATCGGCAT CAACACAGGC
GAGTGCGTCG TCGGCAATAT GGGCTCGGCC CGCCGCTTCG ATTATTCGGC GCTTGGCGAC
GCGGTCAATC TTGCCTCGCG CCTCGAGGGT GCTTCCAAGA ATTACGGCGT GCCGCTGCTC
TTGGGCGAGC GGACGGCAGC GCTCGCCGCC TCGGAATTTC CGGTGGCCGA ACTCGACCGC
ATCACCGTCA AGGGGCGCAG CGCGGTCTCA CCGGTCTTTA CGGTCGTCGA AGGCGCTTCG
GAAGCCGAGC TCGCACGCCA CCGCACCTAC CTCGCCCGGA AATATGACGG CGACCTCCCC
GCCGATAACG ACCTGTTGGA CGAACTCAAA TCGGCGCTGC CGCCGCTTCG GCGTTACTAT
GAGCGCGAGC GGGAGAAATT CAGAGCGGGA TGA
|
|---|
| Protein sequence | MKASRQLRLS SRRAKLAALA ALVAALVSLV SLTGSWSLVD LRAYDYLSIL GRPNLPEDGP
VIVAIDEPSM AEIGSQWPWP RALHARLIQS LRAAGARAVA LDVIFAEPAA APENDRALAE
VLGPDVVLAG DETLIRTPQA EQFVRTEPLP VFLERGAKVG VASVTLSGDG ILRQIPSYSD
GFATTIASVA GADLARPPGR ALMQTFGPAR TYPTVSYYQA LDPEAFLPEG TFRDRIVIVG
LSLQNAPSIA GGGIDAFATS DTVFSRGRVA GAEIHATIYD NLVHRLFVEQ AGVTVAIAAI
ILATLAASLA VLRSTSWKTL GYGALALASI FLASYALMRL GHVFVSPLAP ALAFVGVAVG
QAGLDYAEER RRRREITRAF SQYLSPALVE RLASDPSQLK LGGERRTLTV LFCDVRGFTT
ISEDMKDDPE GLTTLINRLL TPLSEAVLNR RGTIDKYIGD CLMAFWNAPL DDPDHAVHAV
QAARDMLAAL AKLNAELEAE AKAAGRPPKT LRIGIGINTG ECVVGNMGSA RRFDYSALGD
AVNLASRLEG ASKNYGVPLL LGERTAALAA SEFPVAELDR ITVKGRSAVS PVFTVVEGAS
EAELARHRTY LARKYDGDLP ADNDLLDELK SALPPLRRYY EREREKFRAG
|
|---|
| |