Gene Smed_0040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0040 
Symbol 
ID5320867 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp41068 
End bp42486 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content63% 
IMG OID640788971 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_001325735 
Protein GI150395268 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[TIGR00089] RNA modification enzyme, MiaB family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.23218e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCCAGG AAACCGCTCT TTTGCCGACG TCGCCCGAAG CGGGCGACCT GAACGTCCCG 
GCGCGCAAGG TCTTCGTCAA GACTTACGGC TGCCAGATGA ACGTCTATGA CTCCGATCGC
ATGTCGGATG CGCTGTCGCG CGACGGCTAT GTTGCGACCG ATGTCTTGGA AGAGGCCGAT
TTTGTCCTGC TCAATACCTG CCATATTCGC GAAAAGGCCG CAGAGAAGGT CTATTCGGAG
CTCGGCCGCC TGCGTGACCT GAAGAAGGCG AAGGCGCGCG AGGGCCGCGA GATGCTGATC
GGCGTTGCCG GTTGCGTCGC CCAGGCCGAG GGCAAGGAGA TTCTCCGCCG GGCGCCTGCA
GTCGATCTTG TCATTGGGCC GCAGACCTAC CACCGCCTCC CGGAAGCGCT GAGGCGGGCC
CGCACCGGCG AGCGCATCGT GGAAACGGAT TATGCCATCG AGGACAAGTT CGTCCATTTG
CCGGCGCCAG ACAAGGCCAA GACTCGTGCG CGCGGCGTTA CGGCCTTCCT GACGGTACAG
GAAGGCTGCG ACAAGTTCTG TACCTTCTGC GTCGTTCCCT ACACACGCGG CTCGGAAGTC
TCACGTCCCG TGGCACAGAT CGTCGCGGAG GCGGAGAAGC TCGTTGAGGG CGGCGTGCGC
GAAATCACCC TGCTCGGTCA GAATGTCAAC GCCTGGCACG GTGCCGGTCC GCACGGCCGC
GAATGGGGGC TCGGCGATCT CTTGCGGCGT CTCGGCGAGA TCGAGGGGCT CGCGCGCCTG
CGATACACCA CCAGCCACCC CCGCGACATG GACGACAGCC TGATCGAGGC GCATCGGTCG
ATGGCGAAGC TGATGCCCTA TCTGCATCTG CCGGTGCAGT CAGGCTCGGA TCGTATCCTG
AAGGCGATGA ACCGGCGCCA TACGGCAGCC GAATATCTGG CGCTCGTCGC GCGCATTCGA
GCGGTGCAGC CGGACCTTGC GCTTTCGGGC GACTTCATCG TCGGCTTCCC CGGCGAGACC
GATGAGGACT TCGAGGATAC GCTGCGCCTT GTAGATGCCG TGAACTATGC ACAGGCTTTT
TCGTTTAAGT ACTCGACGCG TCCCGGCACG CCGGGCGCCG AACTCGAGCA ACAGGTTCCC
GAGGACGTGA AGGCGAAGAG ATTGGAAATA TTGCAAGCTT TGCTCATCAA GCAGCAGCGC
GGCTTCGCCG AAGCCTGCGT CGGCCGCGAG ATCGACCTGC TGCTGGAGAA GCCGGGCCGC
ATGCCCGGGC AGCTCGTCGG TCGCTCGCCA TGGCTGCAGC CCGTGAATGT TGATGCAAAA
GCATCGCAAA TCGGTGACAT TATCAGAGTG CGAATCACCA AGGCCGGGCC GAACAGCCTG
TTTGCCGAGA TGATCGGGGA AACGGAAGCA AGGAGCTGA
 
Protein sequence
MTQETALLPT SPEAGDLNVP ARKVFVKTYG CQMNVYDSDR MSDALSRDGY VATDVLEEAD 
FVLLNTCHIR EKAAEKVYSE LGRLRDLKKA KAREGREMLI GVAGCVAQAE GKEILRRAPA
VDLVIGPQTY HRLPEALRRA RTGERIVETD YAIEDKFVHL PAPDKAKTRA RGVTAFLTVQ
EGCDKFCTFC VVPYTRGSEV SRPVAQIVAE AEKLVEGGVR EITLLGQNVN AWHGAGPHGR
EWGLGDLLRR LGEIEGLARL RYTTSHPRDM DDSLIEAHRS MAKLMPYLHL PVQSGSDRIL
KAMNRRHTAA EYLALVARIR AVQPDLALSG DFIVGFPGET DEDFEDTLRL VDAVNYAQAF
SFKYSTRPGT PGAELEQQVP EDVKAKRLEI LQALLIKQQR GFAEACVGRE IDLLLEKPGR
MPGQLVGRSP WLQPVNVDAK ASQIGDIIRV RITKAGPNSL FAEMIGETEA RS