Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0029 |
Symbol | |
ID | 5320856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 25946 |
End bp | 28231 |
Gene Length | 2286 bp |
Protein Length | 761 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640788960 |
Product | malic enzyme |
Protein accession | YP_001325724 |
Protein GI | 150395257 |
COG category | [C] Energy production and conversion |
COG ID | [COG0280] Phosphotransacetylase [COG0281] Malic enzyme |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0000328842 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCGGGTA TCGATAGGTC CGACCGCGCG ATGACGAGCG TCACGGCGCA GGAAGCGCTC GATTTTCACT CTCAAGGCCG CCCCGGAAAG CTGGAGATTT CGCCGACGAA GCCAATGGCG ACGCAGCGGG ATCTGTCTCT CGCCTATTCG CCCGGTGTCG CTGTTCCGGT GAAGGCAATC GCCGAAGACC CGGCAACGGC CTACGACTAT ACCGCGCGCG GCAATATGGT TGCGGTGATT TCCAACGGCA CCGCAATCCT CGGCCTCGGC AATCTCGGCG CGCTCGCCTC GAAGCCCGTC ATGGAAGGCA AGGCCGTCCT GTTCAAGCGC TTCGCCGACG TCGACTCGAT CGACCTCGAA GTGGATACGG ATGACGTTGA CGAGTTCGTC AATTGCGTCC GCTTTCTCGG CCCCTCCTTC GGCGGCATCA ATCTCGAGGA TATCAAGGCG CCTGACTGCT TCATCATCGA ACAGCGGCTG CGCGAAGTCA TGGACATACC CGTTTTTCAT GACGACCAGC ACGGTACCGC GATCATCGCA GCGGCGGGCC TCATCAACGC GCTGACCCTG ACGGGCCGTG ACTTCAAGTC GACCAAGCTT GTCTGCAACG GGGCGGGCGC GGCGGCAATC GCCTGCATCG AACTCATCAA GTCGATGGGC TTCAACCCGG CAAATATCAT TCTCTGCGAT ACCAAGGGGG TGATTTACAA GGGCCGCACC GATGGCATGA ACCAATGGAA GTCCGCACAT GCGGTCGAAA CCGACCGCCG GACGCTTGCG GAGGCCCTCG ACGGCGCCGA CGTATTCTTC GGCCTCTCCG CGAAGGGAGC GCTTTCTGCC GACATGGTTC GCTCCATGGG CGAGCGGCCG ATCATCTTCG CCATGGCCAA TCCCGATCCG GAAATCACGC CGGAAGAGGT CGCCGACATT CGTAATGACG CGATCGTCGC GACCGGCCGT TCGGATTATC CGAACCAGGT CAACAACGTT CTCGGCTTCC CCTATATCTT CCGCGGCGCG CTCGACGTGC GCGCCTCGAC AATCAATGAC GCGATGAAGA TCGCTGCGGC GGAAGCGCTT GCCAATCTCG CCAAGGAAGA CGTCCCGGAC GACGTCGCCG CCGCCTATCA AGGCAATCGG CCGCGCTTCG GGCCGCAATA TATCATTCCC GTTCCCTTCG ATCCGCGGCT CATTTCGGCG ATCCCGATGG CCGTTGCAAA GGCGGCTATG GAGACAGGCG TCGCCCGCAA GCCGATCGAG GACCTCAAGG CCTATGGGGA GCAGCTTTCG GCACGGCGCG ACCCCATCGC CTCGACGTTG CAGCGCATTG TCGAGCGCGT CCGGCGTCAG CCGAAGCGGA TCGTCTTCGC CGAAGGCGAG GAAGTGCAGA TGATGCGCTC GGCTATCGCC TACGCCAACC AGCAGCTCGG CACGGCTCTG CTGCTCGGTC GGGAGGAAGT GATGCGCGAG ACCGCCGAGC GCGAAGGCAT CGACCTCGAC CGCGCGGGCA TCCAGATCGT CAATGCGCGC CTGTCCAAGC GCGTCGGCGC CTATACTGAC TTTCTCTATT CGCGCCTGCA GCGAAAGGGT TATCTCTTCC GCGACGTGCA GCGCCTGATC AATACCGACC GCAACCATTT CGCCGCCTCG ATGGTGGCGC TCGGCGATGC GGACGGCATG GTGACGGGCC TCACGCGCAA CTATTCGACC GCGCTCGAGG ACGTGCGCCG CTGCATCGAT CCAAAGCCCG GCCATCGCGT GATCGGCGTT TCTATTGCGC TCTGCCGCGG CCGCACGGTG CTCGTCGCCG ACACTGCGGT GCACGACATG CCGACCTCAG AGGAACTGGC GGATATCGCC GAGGAGGCAG CCGGCCTCGC AAAGCGGCTC GGCTACGTGC CGCGAGTGGC GATGCTCGCC TATTCGACGT TCGGCCATCC TTCCGGCGAA CGCTCGGAGC GGGTACGCGA GGCGGTGAAG ATCCTCGACA GGCGCCGGGT CGATTTCGAA TATGACGGCG AGATGGCCGC CGACGTGGCA CTCAACGCGC GGGTGATGGA GCAATATCCC TTCTGCCGGC TGTCGGGCAC CGCGAACGTG CTTGTCATGC CCGCATTCCA CTCGGCATCG ATTTCGACGA AGATGCTCCA GGAACTTGGC GGCTCGACCG TGATCGGTCC GTTGCTGGTC GGCCTGGACA AATCGGTCCA GATCGCCTCC ATGTCGGCGA AGGACTCCGA CCTCGTCAAC CTTGCAGCAA TAGCGGCCTA TAACGCCGGG ACGTGA
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Protein sequence | MPGIDRSDRA MTSVTAQEAL DFHSQGRPGK LEISPTKPMA TQRDLSLAYS PGVAVPVKAI AEDPATAYDY TARGNMVAVI SNGTAILGLG NLGALASKPV MEGKAVLFKR FADVDSIDLE VDTDDVDEFV NCVRFLGPSF GGINLEDIKA PDCFIIEQRL REVMDIPVFH DDQHGTAIIA AAGLINALTL TGRDFKSTKL VCNGAGAAAI ACIELIKSMG FNPANIILCD TKGVIYKGRT DGMNQWKSAH AVETDRRTLA EALDGADVFF GLSAKGALSA DMVRSMGERP IIFAMANPDP EITPEEVADI RNDAIVATGR SDYPNQVNNV LGFPYIFRGA LDVRASTIND AMKIAAAEAL ANLAKEDVPD DVAAAYQGNR PRFGPQYIIP VPFDPRLISA IPMAVAKAAM ETGVARKPIE DLKAYGEQLS ARRDPIASTL QRIVERVRRQ PKRIVFAEGE EVQMMRSAIA YANQQLGTAL LLGREEVMRE TAEREGIDLD RAGIQIVNAR LSKRVGAYTD FLYSRLQRKG YLFRDVQRLI NTDRNHFAAS MVALGDADGM VTGLTRNYST ALEDVRRCID PKPGHRVIGV SIALCRGRTV LVADTAVHDM PTSEELADIA EEAAGLAKRL GYVPRVAMLA YSTFGHPSGE RSERVREAVK ILDRRRVDFE YDGEMAADVA LNARVMEQYP FCRLSGTANV LVMPAFHSAS ISTKMLQELG GSTVIGPLLV GLDKSVQIAS MSAKDSDLVN LAAIAAYNAG T
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