Gene Smed_0029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0029 
Symbol 
ID5320856 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp25946 
End bp28231 
Gene Length2286 bp 
Protein Length761 aa 
Translation table11 
GC content63% 
IMG OID640788960 
Productmalic enzyme 
Protein accessionYP_001325724 
Protein GI150395257 
COG category[C] Energy production and conversion 
COG ID[COG0280] Phosphotransacetylase
[COG0281] Malic enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000328842 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCGGGTA TCGATAGGTC CGACCGCGCG ATGACGAGCG TCACGGCGCA GGAAGCGCTC 
GATTTTCACT CTCAAGGCCG CCCCGGAAAG CTGGAGATTT CGCCGACGAA GCCAATGGCG
ACGCAGCGGG ATCTGTCTCT CGCCTATTCG CCCGGTGTCG CTGTTCCGGT GAAGGCAATC
GCCGAAGACC CGGCAACGGC CTACGACTAT ACCGCGCGCG GCAATATGGT TGCGGTGATT
TCCAACGGCA CCGCAATCCT CGGCCTCGGC AATCTCGGCG CGCTCGCCTC GAAGCCCGTC
ATGGAAGGCA AGGCCGTCCT GTTCAAGCGC TTCGCCGACG TCGACTCGAT CGACCTCGAA
GTGGATACGG ATGACGTTGA CGAGTTCGTC AATTGCGTCC GCTTTCTCGG CCCCTCCTTC
GGCGGCATCA ATCTCGAGGA TATCAAGGCG CCTGACTGCT TCATCATCGA ACAGCGGCTG
CGCGAAGTCA TGGACATACC CGTTTTTCAT GACGACCAGC ACGGTACCGC GATCATCGCA
GCGGCGGGCC TCATCAACGC GCTGACCCTG ACGGGCCGTG ACTTCAAGTC GACCAAGCTT
GTCTGCAACG GGGCGGGCGC GGCGGCAATC GCCTGCATCG AACTCATCAA GTCGATGGGC
TTCAACCCGG CAAATATCAT TCTCTGCGAT ACCAAGGGGG TGATTTACAA GGGCCGCACC
GATGGCATGA ACCAATGGAA GTCCGCACAT GCGGTCGAAA CCGACCGCCG GACGCTTGCG
GAGGCCCTCG ACGGCGCCGA CGTATTCTTC GGCCTCTCCG CGAAGGGAGC GCTTTCTGCC
GACATGGTTC GCTCCATGGG CGAGCGGCCG ATCATCTTCG CCATGGCCAA TCCCGATCCG
GAAATCACGC CGGAAGAGGT CGCCGACATT CGTAATGACG CGATCGTCGC GACCGGCCGT
TCGGATTATC CGAACCAGGT CAACAACGTT CTCGGCTTCC CCTATATCTT CCGCGGCGCG
CTCGACGTGC GCGCCTCGAC AATCAATGAC GCGATGAAGA TCGCTGCGGC GGAAGCGCTT
GCCAATCTCG CCAAGGAAGA CGTCCCGGAC GACGTCGCCG CCGCCTATCA AGGCAATCGG
CCGCGCTTCG GGCCGCAATA TATCATTCCC GTTCCCTTCG ATCCGCGGCT CATTTCGGCG
ATCCCGATGG CCGTTGCAAA GGCGGCTATG GAGACAGGCG TCGCCCGCAA GCCGATCGAG
GACCTCAAGG CCTATGGGGA GCAGCTTTCG GCACGGCGCG ACCCCATCGC CTCGACGTTG
CAGCGCATTG TCGAGCGCGT CCGGCGTCAG CCGAAGCGGA TCGTCTTCGC CGAAGGCGAG
GAAGTGCAGA TGATGCGCTC GGCTATCGCC TACGCCAACC AGCAGCTCGG CACGGCTCTG
CTGCTCGGTC GGGAGGAAGT GATGCGCGAG ACCGCCGAGC GCGAAGGCAT CGACCTCGAC
CGCGCGGGCA TCCAGATCGT CAATGCGCGC CTGTCCAAGC GCGTCGGCGC CTATACTGAC
TTTCTCTATT CGCGCCTGCA GCGAAAGGGT TATCTCTTCC GCGACGTGCA GCGCCTGATC
AATACCGACC GCAACCATTT CGCCGCCTCG ATGGTGGCGC TCGGCGATGC GGACGGCATG
GTGACGGGCC TCACGCGCAA CTATTCGACC GCGCTCGAGG ACGTGCGCCG CTGCATCGAT
CCAAAGCCCG GCCATCGCGT GATCGGCGTT TCTATTGCGC TCTGCCGCGG CCGCACGGTG
CTCGTCGCCG ACACTGCGGT GCACGACATG CCGACCTCAG AGGAACTGGC GGATATCGCC
GAGGAGGCAG CCGGCCTCGC AAAGCGGCTC GGCTACGTGC CGCGAGTGGC GATGCTCGCC
TATTCGACGT TCGGCCATCC TTCCGGCGAA CGCTCGGAGC GGGTACGCGA GGCGGTGAAG
ATCCTCGACA GGCGCCGGGT CGATTTCGAA TATGACGGCG AGATGGCCGC CGACGTGGCA
CTCAACGCGC GGGTGATGGA GCAATATCCC TTCTGCCGGC TGTCGGGCAC CGCGAACGTG
CTTGTCATGC CCGCATTCCA CTCGGCATCG ATTTCGACGA AGATGCTCCA GGAACTTGGC
GGCTCGACCG TGATCGGTCC GTTGCTGGTC GGCCTGGACA AATCGGTCCA GATCGCCTCC
ATGTCGGCGA AGGACTCCGA CCTCGTCAAC CTTGCAGCAA TAGCGGCCTA TAACGCCGGG
ACGTGA
 
Protein sequence
MPGIDRSDRA MTSVTAQEAL DFHSQGRPGK LEISPTKPMA TQRDLSLAYS PGVAVPVKAI 
AEDPATAYDY TARGNMVAVI SNGTAILGLG NLGALASKPV MEGKAVLFKR FADVDSIDLE
VDTDDVDEFV NCVRFLGPSF GGINLEDIKA PDCFIIEQRL REVMDIPVFH DDQHGTAIIA
AAGLINALTL TGRDFKSTKL VCNGAGAAAI ACIELIKSMG FNPANIILCD TKGVIYKGRT
DGMNQWKSAH AVETDRRTLA EALDGADVFF GLSAKGALSA DMVRSMGERP IIFAMANPDP
EITPEEVADI RNDAIVATGR SDYPNQVNNV LGFPYIFRGA LDVRASTIND AMKIAAAEAL
ANLAKEDVPD DVAAAYQGNR PRFGPQYIIP VPFDPRLISA IPMAVAKAAM ETGVARKPIE
DLKAYGEQLS ARRDPIASTL QRIVERVRRQ PKRIVFAEGE EVQMMRSAIA YANQQLGTAL
LLGREEVMRE TAEREGIDLD RAGIQIVNAR LSKRVGAYTD FLYSRLQRKG YLFRDVQRLI
NTDRNHFAAS MVALGDADGM VTGLTRNYST ALEDVRRCID PKPGHRVIGV SIALCRGRTV
LVADTAVHDM PTSEELADIA EEAAGLAKRL GYVPRVAMLA YSTFGHPSGE RSERVREAVK
ILDRRRVDFE YDGEMAADVA LNARVMEQYP FCRLSGTANV LVMPAFHSAS ISTKMLQELG
GSTVIGPLLV GLDKSVQIAS MSAKDSDLVN LAAIAAYNAG T