Gene Smed_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0028 
Symbol 
ID5320855 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp24797 
End bp25687 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content61% 
IMG OID640788959 
Producthypothetical protein 
Protein accessionYP_001325723 
Protein GI150395256 
COG category[R] General function prediction only 
COG ID[COG3176] Putative hemolysin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.47407e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGATCG AACTTCTGGA TTCGACGAGC GTGGTTGACA CCTCAAATGC TTTTGTACGC 
AAGACGATTG CCGCTCCGGC GACCGATATT CTTGGGCGGA TCGGCAATCT CGAAACGCGC
CTCGCCCGGT CGGCAGCCGA AATCGACGCG GCGCAGGCGG TTCGCTACAA GGTCTTCGTA
GAGGAGATGA GGGCACAGGT GTCGCCCGAC GCCGAGCGAC GCAAGCGCGA CGTCGACGGT
TGGGATGCGA TCTGCGATCA TCTCCTGGTG CTCGACACTT CAATCGATGG CGATGTGGAG
GAGCAGATCG TCGGAACCTA CCGCCTGCTT CGCCAGGACG TCGCCGAGCG GGCCAGCGGT
TTCTACTCGG CTTCCGAATT CGCGATCGCC GAACTTCTCT CGCGTCACCC GGAGAAGCGC
TTCATGGAGC TTGGACGTTC CTGCGTGCTT TTGAAATATC GGACCAGGCG CACGGTCGAA
TTGCTGTGGC AGGGCAATTG GGCCTATGCC CTGAAGCACG GTATCGATGC GATGTTCGGC
TGTGGTTCTT TTCCCGGCGT GATTCCCGAA GAGCACGCGC TCGCGCTCTC GTTCCTTCAT
CACAACGTGC GGGTCAGGGA CGAGTGGACC GTTGCGGCCC GGCCGGAGCT TTACCGGACA
ATGGACCTTA TGCCTTCGGA GGCGATCGAT CCGAAGAAGG CGCTGGCCGC GCTCCCCCCG
CTCATCAAGG GCTACATGCG GCTCGGCGCA ATGGTCGGCG ACGGGGCGGT TGTGGATCAG
GCGTTCCGCA CCACCGACGT CCTGATCGTC CTGCCGATCA GCAATATTTC CGGGCGTTAT
CTGAACTATT ACGGCGCAGA CGCCGGGCGC TTCTCCTCGT CTGTATCCTG A
 
Protein sequence
MTIELLDSTS VVDTSNAFVR KTIAAPATDI LGRIGNLETR LARSAAEIDA AQAVRYKVFV 
EEMRAQVSPD AERRKRDVDG WDAICDHLLV LDTSIDGDVE EQIVGTYRLL RQDVAERASG
FYSASEFAIA ELLSRHPEKR FMELGRSCVL LKYRTRRTVE LLWQGNWAYA LKHGIDAMFG
CGSFPGVIPE EHALALSFLH HNVRVRDEWT VAARPELYRT MDLMPSEAID PKKALAALPP
LIKGYMRLGA MVGDGAVVDQ AFRTTDVLIV LPISNISGRY LNYYGADAGR FSSSVS