Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0025 |
Symbol | |
ID | 5320852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 21029 |
End bp | 21889 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640788956 |
Product | tRNA/rRNA methyltransferase (SpoU) |
Protein accession | YP_001325720 |
Protein GI | 150395253 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0566] rRNA methylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000152428 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCAACG ACAGAAGCGA CCATGGCACC CCACGCGTAG GGCAGGTGAA GGAGGTCACC AGCCTCACCA ACCCGATCAT CAAGGATATC CGGGCGCTGG CGCAGAAGAA GCATCGCGAC GAGACGCGCT CCTTCATAGC CGAAGGACTG AAGCTCGTCA TAGATGCGCT CGATCTCGGC TGGAGGATCA GGACGCTCGT CTATGCCAAG GCGGCGAAGG GCAAGCCTCA GGTCGAGCAG GTGGCGGCGA AAACCGTGGC GAGAGGCGGG CTCGTCCTCG AGGTCAGCGA GAAGGTGATC TCCGCCATTA CCCGGCGCGA CAATCCGCAA ATGGTTATCG GCATCTTCGA GCAGCGCTAC CAGCCGCTCA AGGATATCCA TCCGCGGGAG GGCGAGACCT ATGTCGCGCT CGATCGGGTG CGCGATCCGG GCAATCTCGG CACGATCATT CGCACGGCCG ACGCGGCCGG CGCTTCCGGA ATCGTTCTTG TCGGCGAGAC CACCGATCCC TTTTCGTTGG AGACAGTTCG GGCAACCATG GGTTCGGTCT TCGCCATGCC GCTCGCACGG GCGAATGCGG AGGATTTCCT GCGTTGGCAG CGAGCAGCGG GCGTTCAGGT TGTGGCGACA CATCTGGCTG GCTCCGTCGA CTATCGGACG ATCGACTACA ACTCGAAGCC TGTCGTGCTT CTGATGGGTA ACGAGCAGGC GGGCCTGCCG GTGGAACTGG CGCGGGAGGC CGGTGCACTC GCGCGCATCC CGCAGTCGGG ACGTGCCGAC TCGCTCAATC TCGCCATTGC GACCGGTATC ATGCTGTTCG AGGCACGGCG CCATCTTCTC TCGCTGGATG AGGGCCGATA A
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Protein sequence | MTNDRSDHGT PRVGQVKEVT SLTNPIIKDI RALAQKKHRD ETRSFIAEGL KLVIDALDLG WRIRTLVYAK AAKGKPQVEQ VAAKTVARGG LVLEVSEKVI SAITRRDNPQ MVIGIFEQRY QPLKDIHPRE GETYVALDRV RDPGNLGTII RTADAAGASG IVLVGETTDP FSLETVRATM GSVFAMPLAR ANAEDFLRWQ RAAGVQVVAT HLAGSVDYRT IDYNSKPVVL LMGNEQAGLP VELAREAGAL ARIPQSGRAD SLNLAIATGI MLFEARRHLL SLDEGR
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