Gene Smed_0025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0025 
Symbol 
ID5320852 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp21029 
End bp21889 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content63% 
IMG OID640788956 
ProducttRNA/rRNA methyltransferase (SpoU) 
Protein accessionYP_001325720 
Protein GI150395253 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0566] rRNA methylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000152428 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCAACG ACAGAAGCGA CCATGGCACC CCACGCGTAG GGCAGGTGAA GGAGGTCACC 
AGCCTCACCA ACCCGATCAT CAAGGATATC CGGGCGCTGG CGCAGAAGAA GCATCGCGAC
GAGACGCGCT CCTTCATAGC CGAAGGACTG AAGCTCGTCA TAGATGCGCT CGATCTCGGC
TGGAGGATCA GGACGCTCGT CTATGCCAAG GCGGCGAAGG GCAAGCCTCA GGTCGAGCAG
GTGGCGGCGA AAACCGTGGC GAGAGGCGGG CTCGTCCTCG AGGTCAGCGA GAAGGTGATC
TCCGCCATTA CCCGGCGCGA CAATCCGCAA ATGGTTATCG GCATCTTCGA GCAGCGCTAC
CAGCCGCTCA AGGATATCCA TCCGCGGGAG GGCGAGACCT ATGTCGCGCT CGATCGGGTG
CGCGATCCGG GCAATCTCGG CACGATCATT CGCACGGCCG ACGCGGCCGG CGCTTCCGGA
ATCGTTCTTG TCGGCGAGAC CACCGATCCC TTTTCGTTGG AGACAGTTCG GGCAACCATG
GGTTCGGTCT TCGCCATGCC GCTCGCACGG GCGAATGCGG AGGATTTCCT GCGTTGGCAG
CGAGCAGCGG GCGTTCAGGT TGTGGCGACA CATCTGGCTG GCTCCGTCGA CTATCGGACG
ATCGACTACA ACTCGAAGCC TGTCGTGCTT CTGATGGGTA ACGAGCAGGC GGGCCTGCCG
GTGGAACTGG CGCGGGAGGC CGGTGCACTC GCGCGCATCC CGCAGTCGGG ACGTGCCGAC
TCGCTCAATC TCGCCATTGC GACCGGTATC ATGCTGTTCG AGGCACGGCG CCATCTTCTC
TCGCTGGATG AGGGCCGATA A
 
Protein sequence
MTNDRSDHGT PRVGQVKEVT SLTNPIIKDI RALAQKKHRD ETRSFIAEGL KLVIDALDLG 
WRIRTLVYAK AAKGKPQVEQ VAAKTVARGG LVLEVSEKVI SAITRRDNPQ MVIGIFEQRY
QPLKDIHPRE GETYVALDRV RDPGNLGTII RTADAAGASG IVLVGETTDP FSLETVRATM
GSVFAMPLAR ANAEDFLRWQ RAAGVQVVAT HLAGSVDYRT IDYNSKPVVL LMGNEQAGLP
VELAREAGAL ARIPQSGRAD SLNLAIATGI MLFEARRHLL SLDEGR