| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0020 |
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| Symbol | |
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| ID | 5320847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 17332 |
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| End bp | 18291 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640788951 |
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| Product | signal peptide peptidase SppA, 36K type |
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| Protein accession | YP_001325715 |
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| Protein GI | 150395248 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000184229 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACGAAC TCGCCATAGC CGACCGCCGC AGCCTGCGCA GAAAGCTGAG CTTCTGGCGT
TGGGCGGCGG CGGCCGTTCT CTTCGCCGGC GGCCTTGCCC TGTTTGCCTT TTCCGGCTGG
GGCGATGTGA CGGAGCGCGC CCGCGATCAC GTTGCGCGCG TCGCCGTCAC AGGTTTGATC
CAGGACGACC GGGAACTGGT CGAGCGGCTG GAACGGATTG CCGAGAACCA GTCAGTCAAG
GCATTGATCG TGACGATCTC GTCCCCGGGG GGCACGACCT ATGGGGGTGA GGTCATATAC
AAGGCGGTCC GCAAGGTGGC CGCCAAAAAA CCGGTGGTCT CGGACGTGCG CACGCTTGCC
GCGTCGGCAG GCTACCTGAT CGCGCTCGCG GGCGACCGTA TCGTCGCCGG CGAGACGTCG
ATTACCGGTT CGATCGGCGT CATCTTCCAA TATCCCCAGG TCAAGACCCT GATGGACAAG
CTCGGCGTGT CGCTCGAATC GATAAAGTCG AGGCCCCTCA AGGCCGAGCC CTCGCCGTTC
CATCCTCCGA GCGACGAGGC GAGGGCCATG ATTCAGGCGA TGATCGACGA CAGCTACGGA
TGGTTCGTCG ACCTGGTGGC GGAGCGGCGC AAACTGCCGC GGGCGGAAGC GCTCGGCCTT
GCGGATGGTC GGATCTTCAC CGGCCGGCAG GCACTGGAAG GCAAGCTCGT CGACGAACTC
GGCGGCGATG ATGAAATCAG GGCTTTCCTG GCCGAAAGGA AGGTCTCGAA GGACCTGCCC
GTCCTCGATT GGGAAGCTCC GAGCAGCACG CTGTCTTTCG GCCTCGGCTC GCTCCTGGCC
GAAGCCGTCA AGGCGTTGGG ATATGAGGCT TTTCCGGCAA TGAAGGGCCT CGAAAAGACC
GGCCTGGACA AGTTGTTTCT TGACGGTCTT CTTTCGGTTT GGCAGGTTGA AGGGCAATGA
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| Protein sequence | MDELAIADRR SLRRKLSFWR WAAAAVLFAG GLALFAFSGW GDVTERARDH VARVAVTGLI
QDDRELVERL ERIAENQSVK ALIVTISSPG GTTYGGEVIY KAVRKVAAKK PVVSDVRTLA
ASAGYLIALA GDRIVAGETS ITGSIGVIFQ YPQVKTLMDK LGVSLESIKS RPLKAEPSPF
HPPSDEARAM IQAMIDDSYG WFVDLVAERR KLPRAEALGL ADGRIFTGRQ ALEGKLVDEL
GGDDEIRAFL AERKVSKDLP VLDWEAPSST LSFGLGSLLA EAVKALGYEA FPAMKGLEKT
GLDKLFLDGL LSVWQVEGQ
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