Gene Smed_0018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0018 
Symbol 
ID5320845 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp16286 
End bp16954 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content55% 
IMG OID640788949 
Producthypothetical protein 
Protein accessionYP_001325713 
Protein GI150395246 
COG category[S] Function unknown 
COG ID[COG5375] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000157484 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTGAACG AAGCGCGATT CCCCGCAACC TTTGCCGAAT CGGGTACGAG TTCTGCCGAT 
GCTTATGCTT CGGCGGCTCG GCATTCGGCG CGCGTAAAGC GCCTGAAAGT CATCCTTCCG
CTGATCGCCG GCCTGATCGC CTTGGTCTTC GCAGCCGTTT CTTTCGTGCG CGCATTTCTG
CCCGAAGAGC TGCAGCTCGA GACGGCAACG ATCGAGAACG GCAAGATCGT CATGCAGAAC
CCCGCGATAT CCGGCCGCAA CAAGCAGGAT ATCAGCTATT CGATGAAGGC TCAGCGAGCG
CTTCAGGATA TTGCCAATCC CAATATCATC ACGCTTGAAA CCATTCATGC GGAGATGCCT
GTCAACGACA CGCTGATCGC GACGGTCGAT GCGCAAAGCG GCGTTTACGA TCGCGGCGCA
AATACGCTCG ATATGAACGC GCCGTTCACG ATTTCCATGA ATAATGGCGT CATTGCCGAT
TTCCAATCCG CCTATCTGGA CATCAATGCC GGCGAAATGG AGACGAAACA CCCGATTGCC
ATCAGCATGA CGGGCGGATC GATCATTGCG CAGAAGCTGC GAATGACGGA TAAGGGACGT
GTTGTAACAT TTGAAGGTAT GGTAAGGGTC AACATCGAAC CCAGCGCCAT CCGCAAAACC
GCGAAATAA
 
Protein sequence
MLNEARFPAT FAESGTSSAD AYASAARHSA RVKRLKVILP LIAGLIALVF AAVSFVRAFL 
PEELQLETAT IENGKIVMQN PAISGRNKQD ISYSMKAQRA LQDIANPNII TLETIHAEMP
VNDTLIATVD AQSGVYDRGA NTLDMNAPFT ISMNNGVIAD FQSAYLDINA GEMETKHPIA
ISMTGGSIIA QKLRMTDKGR VVTFEGMVRV NIEPSAIRKT AK