Gene Maeo_1160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMaeo_1160 
SymboltruD 
ID5326725 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanococcus aeolicus Nankai-3 
KingdomArchaea 
Replicon accessionNC_009635 
Strand
Start bp1217750 
End bp1218949 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content23% 
IMG OID640788563 
ProducttRNA pseudouridine synthase D 
Protein accessionYP_001325349 
Protein GI150401583 
COG category[S] Function unknown 
COG ID[COG0585] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00094] tRNA pseudouridine synthase, TruD family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000300328 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTAA GGCAAACTAA TGGCGATTTC ATTGTAAATG AGATATTGGA CAATGAATTT 
ATAAAAGAAA ATCCATCGGG CAATTATAGT TTATATATTT TAAAAAAATC AAATATTGAA
AATTTAAAGG CATTAAATTA TATCTCTAAA AATTGCAATA TTCCGATAAA TGATATAGGA
TACTGCGGTT TAAAAGATAA ATATGCTATA ACAACACAAT ATATTTCAAT ACCTACAAAA
TACGATAAAA TTGAATTAAA TGAGAAAAAT TTAACATTAA AATATTTAAA AACAATAAAT
AGTCCCTTAA AAATTGGTAG TTTAATGGGA AATTCTTTTA AAATTACAGT TAGGGCAATT
GATAAAAACG ATTTTTCAAA TATTTCTAAA AATTTACAGA ATTTGGAGCA AGGAGCTCCT
AACTATTTTG ATGACCAAAG ATTTGGAAGT GTATTTCATA ATCAATTTAT AGCAAAATAT
TATTTAAAAG GAGAATATGA AAAAGCATTA AAAATAATAC TTACAGAATA TACAAGAAGT
GAAAATAAAC GAATAAAGGA CTTAAAAAGA AACATAAAAA AGAACTGGAA TAAATGGGAC
AATATAATAG AATATATTAA AAATAATAAA ATAAACAGTA AAATGTTTGT CAACATTATA
AAATATTTAA ATAATCCAGA ACGAAATAAC AACTATAAAG AAGCTTTTAA ATATGTTGAT
AATCGATTAA AAAAGCTTTT TGTATTATCC TATCAAAGTT ATTTATGGAA TGAATGTATA
AAGGAGCTCC TAAAAACTAA ACTACCAAAG GAACAAAGAA AATATGTAGA TTATAGCTGT
GGAACATTCT TATATTATTC AAAAATAGAT AATGAATTAT TTAATACCTT AAAAAAAGAT
AAATTCCCAA CCATCGCCCC CGATATAGAT TATAATAATC ATAAAGACGA ATACTATAAC
ATAATATTAA AAATATTAAG AAAAGAACGA GCCTCTTTAA AAGATTTTAA TAATTTAATG
GAATTAAATA AACTGTCTTA TGTGGAACGG GATATATTAA ATATTCCAAA AAATATTAAA
TATGGGGATT TTGAGCCCGA TGAGTTTAAC AAAGGAAAAT ATAAAATAAC AATAGAATTT
GAATTAAATA AAGGTAGTTA TGCCACCATA ATCATAAAAA GAATATTTAA TATTCAATAA
 
Protein sequence
MKLRQTNGDF IVNEILDNEF IKENPSGNYS LYILKKSNIE NLKALNYISK NCNIPINDIG 
YCGLKDKYAI TTQYISIPTK YDKIELNEKN LTLKYLKTIN SPLKIGSLMG NSFKITVRAI
DKNDFSNISK NLQNLEQGAP NYFDDQRFGS VFHNQFIAKY YLKGEYEKAL KIILTEYTRS
ENKRIKDLKR NIKKNWNKWD NIIEYIKNNK INSKMFVNII KYLNNPERNN NYKEAFKYVD
NRLKKLFVLS YQSYLWNECI KELLKTKLPK EQRKYVDYSC GTFLYYSKID NELFNTLKKD
KFPTIAPDID YNNHKDEYYN IILKILRKER ASLKDFNNLM ELNKLSYVER DILNIPKNIK
YGDFEPDEFN KGKYKITIEF ELNKGSYATI IIKRIFNIQ