Gene SaurJH1_0579 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaurJH1_0579 
SymbolrpoB 
ID5315067 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStaphylococcus aureus subsp. aureus JH1 
KingdomBacteria 
Replicon accessionNC_009632 
Strand
Start bp620019 
End bp623570 
Gene Length3552 bp 
Protein Length1183 aa 
Translation table11 
GC content38% 
IMG OID640778666 
ProductDNA-directed RNA polymerase subunit beta 
Protein accessionYP_001315724 
Protein GI150393049 
COG category[K] Transcription 
COG ID[COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit 
TIGRFAM ID[TIGR02013] DNA-directed RNA polymerase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGCAGGTC AAGTTGTCCA ATATGGAAGA CATCGTAAAC GTAGAAACTA CGCGAGAATT 
TCAGAAGTAT TAGAATTACC AAACTTAATA GAAATTCAAA CTAAATCTTA CGAGTGGTTC
CTAAGAGAAG GTTTAATCGA AATGTTTAGA GACATTTCTC CAATTGAAGA TTTTACTGGT
AATTTGTCAT TAGAGTTTGT GGATTACCGT TTAGGAGAAC CAAAATATGA TTTAGAAGAA
TCTAAAAACC GTGACGCTAC TTATGCTGCA CCTCTTCGTG TAAAAGTGCG TCTAATCATT
AAAGAAACAG GAGAAGTTAA AGAACAAGAA GTCTTTATGG GTGATTTCCC ATTAATGACT
GATACAGGTA CGTTCGTTAT CAATGGTGCA GAACGTGTAA TCGTATCTCA ATTAGTTCGT
TCACCATCCG TTTATTTCAA TGAAAAAATC GACAAAAATG GTCGTGAAAA CTATGATGCA
ACAATTATTC CAAACCGTGG TGCATGGTTA GAATATGAAA CAGATGCTAA AGATGTTGTA
TACGTACGTA TTGATAGAAC ACGTAAACTA CCATTAACAG TATTGTTACG TGCATTAGGT
TTCTCAAGTG ACCAAGAAAT TGTTGACCTT TTAGGTGACA ATGAATATTT ACGTAATACT
TTAGAGAAAG ACGGCACTGA AAACACTGAA CAAGCGTTAT TAGAAATCTA TGAACGTTTA
CGTCCAGGTG AACCACCAAC TGTTGAAAAT GCTAAAAGTC TATTGTATTC ACGTTTCTTT
GATCCAAAAC GCTATGACTT AGCAAGCGTG GGTCGTTATA AAACAAACAA AAAATTACAT
TTAAAACATC GTTTATTTAA TCAAAAATTA GCTGAGCCAA TTGTAAATAC TGAAACTGGT
GAAATTGTAG TTGAAGAAGG TACAGTGCTT GATCGTCGTA AAATCGACGA AATCATGGAT
GTACTTGAAT CAAATGCAAA CAGCGAAGTG TTTGAATTGC ATGGTAGCGT TATAGACGAG
CCAGTAGAAA TTCAATCAAT TAAAGTATAT GTTCCTAACG ATGATGAAGG TCGTACGACA
ACTGTAATTG GTAATGCTTT CCCTGACTCA GAAGTTAAAT GCATTACACC AGCAGATATC
ATTGCTTCAA TGAGTTACTT CTTTAACTTA TTAAGCGGTA TTGGATATAC AGATGATATT
GACCATTTAG GTAACCGTCG TTTACGTTCT GTAGGTGAAT TACTACAAAA CCAATTCCGT
ATCGGTTTAT CAAGAATGGA AAGAGTTGTA CGTGAAAGAA TGTCAATTCA AGATACTGAG
TCTATCACAC CTCAACAATT AATTAATATT CGACCTGTTA TTGCATCTAT TAAAGAATTC
TTTGGTAGCT CTCAATTATC ACAATTCATG GACCAAGCAA ACCCATTAGC TGAGTTAACG
CATAAACGTC GTCTATCAGC ATTAGGACCT GGTGGTTTAA CACGTGAACG TGCTCAAATG
GAAGTACGTG ACGTTCACTA CTCTCACTAT GGCCGTATGT GTCCAATTGA AACACCTGAG
GGACCAAACA TTGGATTGAT TAACTCATTA TCAAGTTATG CACGTGTAAA TGAATTCGGC
TTTATTGAAA CACCATATCG TAAAGTTGAT TTAGATACAC ATGCTATCAC TGATCAAATT
GACTATTTAA CAGCTGACGA AGAAGATAGC TATGTTGTAG CACAAGCAAA CTCTAAATTA
GATGAAAATG GTCGTTTCAT GGATGATGAA GTTGTATGTC GTTTCCGTGG TAACAATACA
GTTATGGCTA AAGAAAAAAT GGATTATATG GATGTATCGC CGAAGCAAGT TGTTTCAGCA
GCGACAGCAT GTATTCCATT CTTAGAAAAC GATGACTCAA ACCGTGCATT GATGGGTGCG
AACATGCAAC GTCAAGCAGT GCCTTTGATG AATCCAGAAG CACCATTTGT TGGAACAGGT
ATGGAACACG TTGCAGCACG TGATTCTGGT GCAGCTATTA CAGCTAAGCA CAGAGGTCGT
GTTGAACATG TTGAATCTAA TGAAATTCTT GTACGTCGTC TAGTTGAAGA GAACGGCGTT
GAGCATGAAG GTGAATTAGA TCGCTATCCA TTAGCTAAAT TTAAACGTTC AAACTCAGGT
ACATGTTACA ACCAACGTCC AATCGTTGCA GTTGGAGATG TTGTTGAGTA TAACGAGATT
TTAGCAGATG GACCATCTAT GGAATTAGGA GAAATGGCAT TAGGTAGAAA CGTAGTAGTT
GGTTTCATGA CTTGGGACGG TTACAACTAT GAGGATGCCG TTATCATGAG TGAAAGACTT
GTGAAAGATG ACGTGTATAC TTCTATTCAT ATTGAAGAGT ATGAATCAGA AGCACGTGAT
ACTAAGTTAG GACCTGAAGA AATCACAAGA GATATTCCTA ATGTTTCTGA AAGTGCACTT
AAGAACTTAG ACGATCGTGG TATCGTTTAT ATTGGTGCAG AAGTAAAAGA TGGAGATATT
TTAGTTGGTA AAGTAACGCC TAAAGGTGTA ACTGAGTTAA CTGCCGAAGA AAGATTGTTA
CATGCAATCT TTGGTGAAAA AGCACGTGAA GTTAGAGATA CTTCATTACG TGTACCTCAC
GGCGCTGGCG GTATCGTTCT TGATGTAAAA GTATTCAATC GTGAAGAAGG CGACGATACA
TTATCACCTG GTGTAAACCA ATTAGTACGT GTATATATCG TTCAAAAACG TAAAATTCAT
GTTGGTGATA AGATGTGTGG TCGACATGGT AACAAAGGTG TCATTTCTAA GATTGTTCCT
GAAGAAGATA TGCCTTACTT ACCAGATGGA CGTCCGATCG ATATCATGTT AAATCCTCTT
GGTGTACCAT CTCGTATGAA CATCGGACAA GTATTAGAGC TACACTTAGG TATGGCTGCT
AAAAATCTTG GTATTCACGT TGCATCACCA GTATTTGACG GTGCAAACGA TGACGATGTA
TGGTCAACAA TTGAAGAAGC TGGTATGGCT CGTGATGGTA AAACTGTACT TTATGATGGA
CGTACAGGTG AACCATTCGA TAACCGTATT TCAGTAGGTG TAATGTACAT GTTGAAACTT
GCGCACATGG TTGATGATAA ATTACATGCG CGTTCAACAG GACCATATTC ACTTGTTACA
CAACAACCAC TTGGCGGTAA AGCGCAATTC GGTGGACAAC GTTTCGGTGA GATGGAGGTA
TGGGCACTTG AAGCATATGG TGCTGCATAC ACATTACAAG AAATCTTAAC TTACAAATCC
GATGATACAG TAGGACGTGT GAAAACATAC GAGGCTATTG TTAAAGGTGA AAACATCTCT
AGACCAAGTG TTCCAGAATC ATTCCGAGTA TTGATGAAAG AATTACAAAG TTTAGGTTTA
GATGTAAAAG TTATGGATGA GCAAGATAAT GAAATCGAAA TGACAGACGT TGATGACGAT
GATGTTGTAG AACGCAAAGT AGATTTACAA CAAAATGATG CTCCTGAAAC ACAAAAAGAA
GTTACTGATT AA
 
Protein sequence
MAGQVVQYGR HRKRRNYARI SEVLELPNLI EIQTKSYEWF LREGLIEMFR DISPIEDFTG 
NLSLEFVDYR LGEPKYDLEE SKNRDATYAA PLRVKVRLII KETGEVKEQE VFMGDFPLMT
DTGTFVINGA ERVIVSQLVR SPSVYFNEKI DKNGRENYDA TIIPNRGAWL EYETDAKDVV
YVRIDRTRKL PLTVLLRALG FSSDQEIVDL LGDNEYLRNT LEKDGTENTE QALLEIYERL
RPGEPPTVEN AKSLLYSRFF DPKRYDLASV GRYKTNKKLH LKHRLFNQKL AEPIVNTETG
EIVVEEGTVL DRRKIDEIMD VLESNANSEV FELHGSVIDE PVEIQSIKVY VPNDDEGRTT
TVIGNAFPDS EVKCITPADI IASMSYFFNL LSGIGYTDDI DHLGNRRLRS VGELLQNQFR
IGLSRMERVV RERMSIQDTE SITPQQLINI RPVIASIKEF FGSSQLSQFM DQANPLAELT
HKRRLSALGP GGLTRERAQM EVRDVHYSHY GRMCPIETPE GPNIGLINSL SSYARVNEFG
FIETPYRKVD LDTHAITDQI DYLTADEEDS YVVAQANSKL DENGRFMDDE VVCRFRGNNT
VMAKEKMDYM DVSPKQVVSA ATACIPFLEN DDSNRALMGA NMQRQAVPLM NPEAPFVGTG
MEHVAARDSG AAITAKHRGR VEHVESNEIL VRRLVEENGV EHEGELDRYP LAKFKRSNSG
TCYNQRPIVA VGDVVEYNEI LADGPSMELG EMALGRNVVV GFMTWDGYNY EDAVIMSERL
VKDDVYTSIH IEEYESEARD TKLGPEEITR DIPNVSESAL KNLDDRGIVY IGAEVKDGDI
LVGKVTPKGV TELTAEERLL HAIFGEKARE VRDTSLRVPH GAGGIVLDVK VFNREEGDDT
LSPGVNQLVR VYIVQKRKIH VGDKMCGRHG NKGVISKIVP EEDMPYLPDG RPIDIMLNPL
GVPSRMNIGQ VLELHLGMAA KNLGIHVASP VFDGANDDDV WSTIEEAGMA RDGKTVLYDG
RTGEPFDNRI SVGVMYMLKL AHMVDDKLHA RSTGPYSLVT QQPLGGKAQF GGQRFGEMEV
WALEAYGAAY TLQEILTYKS DDTVGRVKTY EAIVKGENIS RPSVPESFRV LMKELQSLGL
DVKVMDEQDN EIEMTDVDDD DVVERKVDLQ QNDAPETQKE VTD