| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SaurJH1_0538 |
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| Symbol | |
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| ID | 5317232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Staphylococcus aureus subsp. aureus JH1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009632 |
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| Strand | + |
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| Start bp | 566439 |
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| End bp | 569945 |
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| Gene Length | 3507 bp |
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| Protein Length | 1168 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 640778609 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001315683 |
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| Protein GI | 150393008 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAATAT TGACAACGCT TATAAAAGAA GATAATCATT TTCAAGACCT TAATCAGGTA
TTTGGACAAG CAAACACACT AGTAACTGGT CTTTCCCCGT CAGCTAAAGT GACGATGATT
GCTGAAAAAT ATGCACAAAG TAATCAACAG TTATTATTAA TTACCAATAA TTTATACCAA
GCAGATAAAT TAGAAACAGA TTTACTTCAA TTTATAGATG CTGAAGAATT GTATAAGTAT
CCTGTGCAAG ATATTATGAC CGAAGAGTTT TCAACACAAA GCCCTCAACT GATGAGTGAA
CGTATTAGAA CTTTAACTGC GTTAGCTCAA GGTAAGAAAG GGTTATTTAT CGTTCCTTTA
AATGGTTTGA AAAAGTGGTT AACTCCTGTT GAAATGTGGC AAAATCACCA AATGACATTG
CGTGTTGGTG AGGATATCGA TGTGGACCAA TTTCTTAACA AATTAGTTAA TATGGGGTAC
AAACGGGAAT CCGTGGTATC GCATATTGGT GAATTCTCAT TGCGAGGAGG TATTATCGAT
ATCTTTCCGC TAATTGGGGA ACCAATCAGA ATTGAGCTAT TTGATACCGA AATTGATTCT
ATTCGCGATT TTGATGTTGA AACGCAGCGT TCCAAAGATA ATATTGAAGA AGTCGATATC
ACAACTGCAA GTGATTATAT CATTACTGAA GAAGTGATTA GACATCTTAA AGAAGAGTTG
AAAACTGCAT ATGAAAATAC AAGACCCAAA ATAGATAAAT CAGTGCGCAA TGATCTGAAA
GAAACGTATG AAAGCTTTAA ATTATTCGAA AGTACATACT TTGATCATCA AATACTACGT
CGTTTAGTAG CGTTTATGTA TGAAACACCT TCGACAATTA TTGAGTATTT CCAAAAAGAT
GCAATCATTG CAGTTGATGA ATTTAATCGT ATTAAAGAAA CTGAAGAAAG TTTAACAGTA
GAGTCTGATT CGTTTATTAG CAATATTATT GAAAGTGGTA ATGGATTTAT AGGACAAAGT
TTTATAAAAT ATGATGATTT TGAAACATTG ATTGAAGGCT ATCCTGTCAC TTATTTTTCA
TTATTCGCTA CAACAATGCC GATAAAACTA AATCATATTA TTAAATTTTC ATGTAAACCT
GTCCAACAAT TTTATGGGCA ATATGACATT ATGCGTTCTG AATTTCAACG ATATGTCAAT
CAAAATTATC ATATCGTGGT TTTGGTCGAA ACTGAAACTA AAGTTGAACG TATGCAAGCG
ATGTTAAGTG AAATGCATAT TCCATCAATA ACAAAATTGC ATCGCTCAAT GTCATCGGGG
CAAGCAGTGA TTATTGAAGG CAGTTTATCT GAAGGATTTG AACTACCTGA TATGGGATTA
GTTGTCATTA CTGAGCGTGA GCTTTTTAAA TCAAAACAGA AAAAGCAACG AAAACGTACG
AAAGCTATCT CAAATGCTGA AAAAATTAAG TCTTACCAAG ATTTAAATGT GGGAGATTAT
ATTGTTCATG TGCATCATGG TGTTGGTAGA TATTTAGGTG TTGAGACGCT CGAAGTGGGG
CAAACGCATC GTGATTATAT TAAATTGCAA TATAAAGGTA CGGATCAACT ATTTGTTCCA
GTAGATCAAA TGGATCAAGT TCAAAAATAT GTAGCTTCGG AAGATAAGAC GCCAAAATTA
AATAAACTCG GTGGCAGTGA ATGGAAAAAA ACAAAAGCAA AAGTTCAACA AAGTGTTGAA
GATATTGCTG AAGAGTTGAT TGATTTATAT AAAGAAAGAG AAATGGCAGA AGGTTATCAA
TATGGGGAAG ACACAGCTGA GCAAACAACA TTTGAATTAG ATTTTCCATA TGAACTTACG
CCTGACCAAG CTAAATCTAT CGATGAAATT AAAGATGACA TGCAAAAATC GCGTCCAATG
GATCGCTTGC TATGTGGTGA TGTTGGTTAT GGTAAAACTG AAGTTGCAGT GAGAGCAGCA
TTCAAAGCTG TAATGGAAGG AAAGCAAGTT GCATTTTTAG TTCCTACAAC TATTTTAGCT
CAGCAACATT ATGAGACGTT AATTGAGCGT ATGCAAGATT TTCCTGTTGA AATTCAATTA
ATGAGTCGTT TTAGAACGCC GAAAGAGATA AAACAAACTA AGGAAGGACT TAAAACTGGG
TTTGTTGACA TAGTTGTTGG TACACACAAA TTACTTAGTA AAGATATACA GTATAAAGAT
TTAGGGCTGT TGATTGTAGA TGAAGAACAA CGATTTGGTG TACGCCATAA AGAGCGTATT
AAAACATTAA AACATAATGT AGATGTACTA ACATTGACTG CAACCCCAAT ACCTAGAACA
TTGCATATGA GTATGCTAGG TGTGCGCGAT TTGTCAGTGA TTGAAACGCC GCCAGAAAAT
CGTTTCCCAG TTCAAACATA TGTATTAGAA CAGAACATGA GTTTTATCAA AGAAGCTTTA
GAAAGAGAAC TATCCCGTGA TGGCCAAGTG TTTTATCTTT ATAATAAAGT GCAATCCATT
TATGAAAAAC GAGAACAACT CCAGATGTTA ATGCCAGATG CTAACATTGC AGTTGCTCAT
GGACAAATGA CAGAGCGCGA TTTAGAAGAA ACGATGTTAA GTTTTATCAA TAATGAATAT
GATATTTTAG TAACGACGAC GATTATTGAA ACAGGTGTCG ATGTCCCAAA TGCAAATACT
TTGATCATTG AAGATGCAGA TCGCTTTGGA TTGAGTCAGT TGTATCAATT AAGAGGTCGT
GTTGGTCGTT CAAGTCGTAT TGGTTATGCA TACTTCTTAC ATCCAGCAAA TAAGGTACTA
ACTGAGAATG CAGAAGATCG ATTACAAGCG ATTAAAGAAT TTACGGAGTT AGGCTCAGGA
TTTAAGATTG CGATGCGTGA TTTGAACATT CGTGGTGCTG GTAATTTGTT AGGTAAACAA
CAGCACGGCT TTATTGATAC AGTTGGATTT GATTTGTACA GTCAAATGTT AGAAGAAGCT
GTAAATGAAA AACGTGGTAT TAAGGAACCA GAATCTGAGG TGCCAGAAGT CGAAGTTGAT
TTAAACTTGG ATGCATATTT GCCAACAGAA TATATTGCAA ATGAACAAGC TAAAATTGAA
ATTTATAAAA AGCTACGAAA AACTGAAACA TTTGATCAAA TTATCGACAT TAAAGATGAA
TTAATTGATC GTTTTAATGA TTATCCTGTT GAAGTAGCAC GTTTGCTTGA TATAGTGGAA
ATAAAAGTAC ACGCATTACA TTCAGGTATC ACGTTGATTA AAGATAAAGG GAAAATAATT
GATATTCATT TATCTGTAAA AGCCACTGAA AATATTGATG GCGAAGTGCT GTTCAAAGCA
ACACAACCTT TAGGTAGAAC AATGAAGGTT GGTGTTCAAA ATAATGCAAT GACAATTACT
TTAACGAAAC AAAATCAATG GCTTGATAGT TTGAAGTTTT TAGTTAAGTG CATTGAAGAA
AGCATGAGAA TCAGTGATGA AGCATAA
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| Protein sequence | MTILTTLIKE DNHFQDLNQV FGQANTLVTG LSPSAKVTMI AEKYAQSNQQ LLLITNNLYQ
ADKLETDLLQ FIDAEELYKY PVQDIMTEEF STQSPQLMSE RIRTLTALAQ GKKGLFIVPL
NGLKKWLTPV EMWQNHQMTL RVGEDIDVDQ FLNKLVNMGY KRESVVSHIG EFSLRGGIID
IFPLIGEPIR IELFDTEIDS IRDFDVETQR SKDNIEEVDI TTASDYIITE EVIRHLKEEL
KTAYENTRPK IDKSVRNDLK ETYESFKLFE STYFDHQILR RLVAFMYETP STIIEYFQKD
AIIAVDEFNR IKETEESLTV ESDSFISNII ESGNGFIGQS FIKYDDFETL IEGYPVTYFS
LFATTMPIKL NHIIKFSCKP VQQFYGQYDI MRSEFQRYVN QNYHIVVLVE TETKVERMQA
MLSEMHIPSI TKLHRSMSSG QAVIIEGSLS EGFELPDMGL VVITERELFK SKQKKQRKRT
KAISNAEKIK SYQDLNVGDY IVHVHHGVGR YLGVETLEVG QTHRDYIKLQ YKGTDQLFVP
VDQMDQVQKY VASEDKTPKL NKLGGSEWKK TKAKVQQSVE DIAEELIDLY KEREMAEGYQ
YGEDTAEQTT FELDFPYELT PDQAKSIDEI KDDMQKSRPM DRLLCGDVGY GKTEVAVRAA
FKAVMEGKQV AFLVPTTILA QQHYETLIER MQDFPVEIQL MSRFRTPKEI KQTKEGLKTG
FVDIVVGTHK LLSKDIQYKD LGLLIVDEEQ RFGVRHKERI KTLKHNVDVL TLTATPIPRT
LHMSMLGVRD LSVIETPPEN RFPVQTYVLE QNMSFIKEAL ERELSRDGQV FYLYNKVQSI
YEKREQLQML MPDANIAVAH GQMTERDLEE TMLSFINNEY DILVTTTIIE TGVDVPNANT
LIIEDADRFG LSQLYQLRGR VGRSSRIGYA YFLHPANKVL TENAEDRLQA IKEFTELGSG
FKIAMRDLNI RGAGNLLGKQ QHGFIDTVGF DLYSQMLEEA VNEKRGIKEP ESEVPEVEVD
LNLDAYLPTE YIANEQAKIE IYKKLRKTET FDQIIDIKDE LIDRFNDYPV EVARLLDIVE
IKVHALHSGI TLIKDKGKII DIHLSVKATE NIDGEVLFKA TQPLGRTMKV GVQNNAMTIT
LTKQNQWLDS LKFLVKCIEE SMRISDEA
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