| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6400 |
|---|
| Symbol | |
|---|
| ID | 5320703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009622 |
|---|
| Strand | - |
|---|
| Start bp | 61783 |
|---|
| End bp | 62478 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640777980 |
|---|
| Product | VirB8 family protein |
|---|
| Protein accession | YP_001314912 |
|---|
| Protein GI | 150378318 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAA CGAATGACGC AACTCTTCGG AGCTACTTTC AGGACGGTGA TCGCTGGGAA
CAGGAGATCG TCAAAAAAGC CAAGCGATCG CGCTCGCTCG CATGGTTCGT CACAATGATT
TTCGGCGCGA TCACCCTGCT GTCACTGACA GCATTGGTGA TGCTCGTTCC GCTGAAGAGC
TTTGAGCCGT ACATCGTCGA GGTCGATAAA AACACCGGCT ATATGGAGGT GAAGACCAGC
CTAACTAGGT CCGCCAAGCT GACCGACCAA CAGGCGGTCA CTCAAGCGAA TGTCGTTCGC
TATATCCGAT CTCGCGAAGG CTACGACCCA TTCGCGATTG AGCAGAATTT CGGCATCGCC
GCCCTGCTCT CTACTGATGA TGCGGCCCGC GAGCTGCAGG AGCTTTACAG TGCGGCAAAT
CCCAACAATC CCGCAAAGGT CCTCGGCAAG AACAAGAAGG TAACCGTCGA CATCAAGTCC
GTCACCTTCT CCAATGCGAG CACGGCCTTG GTCCGTTTTT CCACGACCGA AAAATCGGAC
ACGGATTCGA TCGTGCGTCA CTACATTTCA GTCGTTCGCT ATCGCTATAC GGATACGCCG
GCGACCAACG AATGGCGTTT TGAGAACCCC TTGGGCTTCC AGGTCTACAA CTACCGTCGC
GATCAAGAAA CGGTTACGTC GGGAGGCGAG GAATGA
|
|---|
| Protein sequence | MAETNDATLR SYFQDGDRWE QEIVKKAKRS RSLAWFVTMI FGAITLLSLT ALVMLVPLKS
FEPYIVEVDK NTGYMEVKTS LTRSAKLTDQ QAVTQANVVR YIRSREGYDP FAIEQNFGIA
ALLSTDDAAR ELQELYSAAN PNNPAKVLGK NKKVTVDIKS VTFSNASTAL VRFSTTEKSD
TDSIVRHYIS VVRYRYTDTP ATNEWRFENP LGFQVYNYRR DQETVTSGGE E
|
|---|
| |