| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6159 |
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| Symbol | |
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| ID | 5320461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 1083205 |
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| End bp | 1085574 |
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| Gene Length | 2370 bp |
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| Protein Length | 789 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640777786 |
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| Product | type IV secretion system protein VirB4 |
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| Protein accession | YP_001314718 |
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| Protein GI | 150378123 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0089682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGGCA CAAATGGCAG GAACGAGAGG TCTGGTGAGA TATATCTACC ATATGTCGGC
CACCTCAGCG ATCAGGTTGT CCTTCTCGAA GACGGCTCAG TCATGGCTAT GGCACACGTC
AAAGGTTTGC CCTTCGAAAT GGAAGACGTT GCCATCCGCA ATGCACGCTG CCGAGCGTTC
AATACGCTCT TACGCAACAT TGCCGATGAT AGTGTATCAA TATGTGCTCA TCTGGTCCGA
CATAACGACG TGGCGTTGCC CCCGGCGCGG CACTTTCATA GCGGGTTTGC TGGTAGTCTG
AGCGAAGCTT ATGAGCGGCG TGTGCTGTCC GGAAAACTCT TTCGAAACGA TCATTTCCTC
ACCTTGGTCG TGTTTCCCCG AACTGCGGTC GGTAAAATCA CGGGCCGGTT CATCAAGCGG
AACAATAGAA ACGAGAACGA TTTAGCAAAT CAGACGCGGA ACCTGGAAGA TCTGTGGCAC
ATCACTAGTG GCGCCCTCGA CGCCTATGGT CTCCGCCGGC TTGGTCTCCG CGAGAAAGAT
GGCGTGATTT TCTCGGAAAT CGCGGAGGCG CTCCGACTTA TAATGACCTG CCGTGCCACT
CCGGTTCCAG TGGTTAGTGG TTCACTGGGC GCTTCGATTT ATACCGACCG AGTAATCTGC
GGCAAGCGGG CACTGGAGAT TCGAACCCCG GGAGATAGCT ACGTTGGCTC ATTGTTCTCA
TTTCGAGAAT ATCCGGCAAA GACGCGGCCA GGCATGCTCA ATCCGCTATT GTCCGCGAAT
TTCCCGCTCG TGTTGAGCCA AAGTTTCTCC TTCCTCACGC GTGCACAGGC CCATGCCAAA
CTCAGCCTCA AGTCCAGTCA AATGACGAGT TCCGGTGACA AGGCCGTCTC CCAAATCAAT
GAACTCGCCG AGGCAGAGGA CGCGTTGGCA AGCAGCGAAT TCGTAATGGG CGCGCATCAT
TTGAGCCTGT GCGTGTATGC CGATGATCTC AATAGCCTTG CCAACCGCGC CGCAAGCGCC
CGCACGCGAT TGACGGATGC GGGCGCCGTT ATCGTCCAAG AGGGTATTGG TATGGAGGCG
GCTTATTGGG CGCAACTTCC GGGGAACACC AAGTGGCGCA CGCGACCCGG GGCGATCACC
TCACGCAATT TCGCGGGCCT TGTCTCGTTC GAGAATTTCC CAAGTGGCAA GGATTCCGGC
CACTGGGGCA ACTCGGTTGC GCGCTTCCGC ACCAATGGTG GAACCCCTTT CGACTACCTC
CCTCACGAGA ATGACGTGGG TATGACGGCA ATATTCGGAC CCGTCGGAAA AGGCAAAACA
ACGCTCATGA CCTTTGTCCT TGCGATGCTC GAACAGAGCA TGGTTGGACA CGATGGTGCG
ATTGTCTTCT TTGACAAGGA CCGCGGTGGT GAACTGCTGG TACGTGCCAC GGGAGGCACG
TATCTGGCGT TACGTAGAGG CGTTCCCAGT GGCCTGGCGC CTCTACGGGC CCTGGACGAT
ACGTCGGCCT CCCGAGACTT TCTGCGCGAG TGGGTGACAG CCTTGATCGA GAGCGATGGA
CGGGGAGCTA TTTCGCCGGA AGAGAACCGC CGCCTGGAAC GCGCCATCGT CCGGCAGCTT
TCATTTGAGC CCGCTATGCG TTCCCTCGCG GGCCTACGCG AATTCCTATT ACACAGCCCG
TCCGAAGGCG CAGGAGCGCG ACTGGAGCGG TGGTGCAGAG GAAACGCGCT CGGTTGGGCC
TTCGATGGCG AGGTGGATGA AGTAAGACTG CATGCCTCCA TTACCGGCTT CGATATGACA
CAGATTCTGG AGTACGAAGA GGTTTGCGCG CCGGCGGCCG CATACCTCCT CCATCGCGTG
GGCGCTGTTG TGGATGGCCG TCGCTTTGTC ATGTGTTGCG ACGAGTTTCG ATTTTATTTA
TTAAACCCTC AGTTCGCTGC AGTTGTAGAC AAGTTCTTGC TCACTGTTCG CAAGAATAAC
GGCATGTTGA TACTCGCAAC ACAGCAGCCT GAGCATGTTC TCGAATCGCC CCTCGGAGCC
AGTCTCGTGG CACAATGCAT GACAAAAATT TTCTATCCAT CTCCGACGGC GGATCGATCA
GCCTATGTCG GCGGCTTAAA GTGTACCGAA GGAGAATATC AAGCCGTTCG CGAGCAGATG
GCAATCGGGA GCCGCAAATT TCTGCTTAAG CGCGAGAGCG GAAGCGTTAT CTGCGAATTC
GACCTCGGCG AGATGCGCGA ATATGTCGCC GTGCTATCGG GTCGGGCCAA CACGGTGCGT
TTTGCCGATC AGCTCCGTGC CAGACACGGG GATGCTCCTG GTGCGTGGGT AGACGAGTTC
ATGGCCCGTT ACCAAGAAGT TCAAGACTGA
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| Protein sequence | MFGTNGRNER SGEIYLPYVG HLSDQVVLLE DGSVMAMAHV KGLPFEMEDV AIRNARCRAF
NTLLRNIADD SVSICAHLVR HNDVALPPAR HFHSGFAGSL SEAYERRVLS GKLFRNDHFL
TLVVFPRTAV GKITGRFIKR NNRNENDLAN QTRNLEDLWH ITSGALDAYG LRRLGLREKD
GVIFSEIAEA LRLIMTCRAT PVPVVSGSLG ASIYTDRVIC GKRALEIRTP GDSYVGSLFS
FREYPAKTRP GMLNPLLSAN FPLVLSQSFS FLTRAQAHAK LSLKSSQMTS SGDKAVSQIN
ELAEAEDALA SSEFVMGAHH LSLCVYADDL NSLANRAASA RTRLTDAGAV IVQEGIGMEA
AYWAQLPGNT KWRTRPGAIT SRNFAGLVSF ENFPSGKDSG HWGNSVARFR TNGGTPFDYL
PHENDVGMTA IFGPVGKGKT TLMTFVLAML EQSMVGHDGA IVFFDKDRGG ELLVRATGGT
YLALRRGVPS GLAPLRALDD TSASRDFLRE WVTALIESDG RGAISPEENR RLERAIVRQL
SFEPAMRSLA GLREFLLHSP SEGAGARLER WCRGNALGWA FDGEVDEVRL HASITGFDMT
QILEYEEVCA PAAAYLLHRV GAVVDGRRFV MCCDEFRFYL LNPQFAAVVD KFLLTVRKNN
GMLILATQQP EHVLESPLGA SLVAQCMTKI FYPSPTADRS AYVGGLKCTE GEYQAVREQM
AIGSRKFLLK RESGSVICEF DLGEMREYVA VLSGRANTVR FADQLRARHG DAPGAWVDEF
MARYQEVQD
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