| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6088 |
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| Symbol | |
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| ID | 5320390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 1022631 |
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| End bp | 1023818 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640777731 |
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| Product | peptidase C1A papain |
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| Protein accession | YP_001314663 |
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| Protein GI | 150378068 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4870] Cysteine protease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCCTA CAATGCCGTT CTATAACTTT CTGCCGGAGG ATTTCAAGGT CTATGTCGGC
GCGGATGGAG GTGTGTCTTA CATGCCCGGC CCGCAGCGGC AGGAGCGCAC TTTGCCGACG
ATCAATCGTT ACGGGGGGCC TGACGGTGGC TATGTCGCGG TCTGTTCGCG TGTGGCGGAT
CATGCTGTCT ATTCCGTTGG CGACGGGATC TATGTGGTTG GCCAGATCAG GCTGCAAGGT
GCCTATGAGG GGCGCTTTTT CGTGCCGAAG GGCTATGGAG GAAAGTGCAT CAGCGCTGCT
CCGGACATAA AGGCGATATG CGATCAAGCC TTTCCCGGTA GCGCACCCAA CTGGGCGAGC
GGCGATGCCG GCGGTTGGTT TGGTCTGCTG ATCGATAAGC GGGACGTTCG CGATAAGATC
CTCACGTTGG ATTTGCCCCA GCAATTGCCG GAAAAGGTTG ATTTGCGACG ATGGTGCTCG
CAGGTCCAAA ATCAGGGCAC CTTGAACGCC TGCACCGCCT ACGCCGCCTC GGCCATCCTG
GAATATTTCG AAAATCGCGC CGGCGGAAAC GCAGTGTCGC TGTCGGAAAT TTTCCTTTAC
AAGGTCACGC GCAACCTGAT GCACAAGACG GGCGACACGG GAGCCAATAC GCGATCCGTC
ATGAAGGCTT TGGCAGCCTT AGGCACGGTG CCGGAAGAAT ATTGGCCGGA TGACGCATCC
CAATTCGATG CTGAACCGTC TGCCTTTGCC TATGCGCTGG CAGGTCGTTA TCGCTCTCTC
AAGTACAGCA GGATTGATGC GAAGGACCGT TCAAAGGACG TGGTGTTGCG CCAGGCCAAG
ACATTGCTCA GTCGGAACCG TCCGGTCATG TTTGGCGTCA TGGCGTATTT CGGCACTTGG
CAGCAATTCG TGACGTCCGA TCGCCTGCCT TACCCGAGTG AGGATGACAC GCTTTTTGGC
GCCCATAACA TTGCCGTCAT GGGCTATGAC GATGGCATCA CAACGGAAAA TGCCAAGAAC
CCCGGCATCA AGACGAGGGG CGCCTTCCTC ATTAAAAACT CCTATGGCGA GGAGTGGGGT
GACAAGGGCT ACGGCTGGAT TCCTTACGAT TACCTACTGA AACATCAGTC GATTGACTGG
TGGACGATCA CCAAGCAGGA ATGGCTCGAC ATGAGCGTGT TCAGCTAA
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| Protein sequence | MQPTMPFYNF LPEDFKVYVG ADGGVSYMPG PQRQERTLPT INRYGGPDGG YVAVCSRVAD
HAVYSVGDGI YVVGQIRLQG AYEGRFFVPK GYGGKCISAA PDIKAICDQA FPGSAPNWAS
GDAGGWFGLL IDKRDVRDKI LTLDLPQQLP EKVDLRRWCS QVQNQGTLNA CTAYAASAIL
EYFENRAGGN AVSLSEIFLY KVTRNLMHKT GDTGANTRSV MKALAALGTV PEEYWPDDAS
QFDAEPSAFA YALAGRYRSL KYSRIDAKDR SKDVVLRQAK TLLSRNRPVM FGVMAYFGTW
QQFVTSDRLP YPSEDDTLFG AHNIAVMGYD DGITTENAKN PGIKTRGAFL IKNSYGEEWG
DKGYGWIPYD YLLKHQSIDW WTITKQEWLD MSVFS
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