Gene Smed_5905 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5905 
Symbol 
ID5320207 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp870674 
End bp871651 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content63% 
IMG OID640777600 
Producthypothetical protein 
Protein accessionYP_001314532 
Protein GI150377937 
COG category[S] Function unknown 
COG ID[COG3181] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.339531 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAGCA GACGTGGATT TCTCGCCGGC ACGGCCGGCG TCGCAATGGC GGGTTTCGCA 
GGTATTCGCA TCAGCCTGGC TGCGACTTTT GAATCGATGG ACATCTTCAT CCCCGGTTCG
CCCGGCGGCG GCTGGGACCT CACCGGCCGC GTTATTGACG AGGTCATGAA GAAGAACGGC
CTCATCGGCA ATTCGCGGAT CACCAATGCC GGCGGCGCCG GCGGTACGAT CGGTCTGCCG
CAGTTCATCA ACCAGTATGA CGGCGAAGCC GATGCGCTGT TCGTCGCCGG CGCCATCATG
GTGGGCACCA CCATTACCAA CAACACGCCG GTCGACCTGA CGATGCTGAA GCCGGTGGCG
CGACTGACCG GCGAGTACCA GGTGCTCGTC GTCCCGTCCG CTTCCCCTGT ACAGAACCTG
ACCGACTTCG TGGCACTGCT GAAGAAGGAT CCAAGGTCTG TGACCTGGGC CGGCGGAGCG
CCCGGCGGCA CCGACCACAT CTTTGCCTGC ATGATCGCGA AGGCGGCCGG TGTCGCGCTC
GGCGATCTCT CCTATGTCGC CTATACCGGC GGCGGTGGCG AGGCCATGGC ATCCCTTCTC
GGCAACCAGG TCTCCTGCGG CATTTCCGGT TACGGCGAAT TCGCGGAGCA GATCAAAGCC
GGAAATTTGC GGGCGATCGC GATTTCCGCG CCGGAACGCG TGTCCGGCAT CGAGGTTCCG
ACGCTTGTGG AACAGGGCGT CGACGTCACG ATCTCCAACT GGCGCGGCGT CTTCGGCGCG
CCGAACATCG GCGACGACGA GGTCAAGGCG CTGATCGACC TCACGACCAC GATGGTCCAG
ACCAGGGATT GGAAGGACCA GCTCGCCACA CGCGGATGGA GCGATCAGTT CCTGCCGGGG
GCCGAATTCG CGGCCTATCT TGAGAAGGAT ACGATCGCCA CGCGCAGCGT TCTCGTGGAC
CTCGGCCTGG CAAAATGA
 
Protein sequence
MISRRGFLAG TAGVAMAGFA GIRISLAATF ESMDIFIPGS PGGGWDLTGR VIDEVMKKNG 
LIGNSRITNA GGAGGTIGLP QFINQYDGEA DALFVAGAIM VGTTITNNTP VDLTMLKPVA
RLTGEYQVLV VPSASPVQNL TDFVALLKKD PRSVTWAGGA PGGTDHIFAC MIAKAAGVAL
GDLSYVAYTG GGGEAMASLL GNQVSCGISG YGEFAEQIKA GNLRAIAISA PERVSGIEVP
TLVEQGVDVT ISNWRGVFGA PNIGDDEVKA LIDLTTTMVQ TRDWKDQLAT RGWSDQFLPG
AEFAAYLEKD TIATRSVLVD LGLAK