Gene Smed_5841 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5841 
Symbol 
ID5320143 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp805154 
End bp805831 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content64% 
IMG OID640777536 
ProductGntR family transcriptional regulator 
Protein accessionYP_001314468 
Protein GI150377873 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGTG ACGCGACAAT CTCGGCGGCG CAGCATTGCT ACCGCACCCT TTCGCGCAAG 
ATCATCGGTT TGGAGCTCAA GCCGAACGCG CCGATCGGAG AGCATACGCT GGCGGGTCTC
CTCGGCGTCA GCCGCACGCC TGTGCGCGAG GCTTTGTCGC GGTTGAGCGC GGAAGGACTT
GTCGACCTGC GGTCAAGGGC AGGCGTCGTG GTCGCGCCGA TCCGCATGGA TGCGGTCCGT
ACGGCACAAT TTGTTCGCGA ACAGCTGGAG GTGGCAATCG TCGCCGAAGC GGCCCGGCAA
AGCAACCGCC GCATACTGCT CGGCATCAGG CAGGCGATAG AGGAGCAGGA GCTTGCCATC
CTCGAAGACA ATCCCGACCT GTTCTTCGAG TGCGACGAGC GCATGCACGC GCTTTACTGC
AACCTCGCAG GACGCGATGG GGTGTGGAGC TTCATTTCCG AAGCCAAGAA GCACATCGAC
CGCGTTCGCC GGCTATCGAT ACAGGCTGGC CAGCTCGACC AGCTGGTCGA GGACCACCAG
AGGGTCCTCG AGGCGGTGAC CGAAGGGGAT GCCGCCAGTG CTCAGGAGAC CATGCGGCTC
CACCTGCGGC GCGCAATGCT CGACCTGAAC GAGCTTGCCC GGCGGTTTCC CTCCTATTTT
GCGTCGGACG CCTCCTGA
 
Protein sequence
MARDATISAA QHCYRTLSRK IIGLELKPNA PIGEHTLAGL LGVSRTPVRE ALSRLSAEGL 
VDLRSRAGVV VAPIRMDAVR TAQFVREQLE VAIVAEAARQ SNRRILLGIR QAIEEQELAI
LEDNPDLFFE CDERMHALYC NLAGRDGVWS FISEAKKHID RVRRLSIQAG QLDQLVEDHQ
RVLEAVTEGD AASAQETMRL HLRRAMLDLN ELARRFPSYF ASDAS