| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5698 |
|---|
| Symbol | |
|---|
| ID | 5320000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 673008 |
|---|
| End bp | 673907 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640777423 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_001314355 |
|---|
| Protein GI | 150377760 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.341043 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATG TCGGCATTGC GTCTTTCAAA GCCGGACTAA TCGGAAAGGG CATTCAAGCG
TCCTTGACGC CAGCCTTGCA TATGGCAGAG GGAAGGGCGC AAGGTTTCGA GTACTTTTAC
GATTTATTCG ACCTGGACGG AGTCGTTGGC AGTAGCGAGC CTCTCACCAA TCTTCTCGCG
GAAGCGGAGG GGCGGGGCCT CGGCGGCCTG AACATTACGC ACCCATTCAA GCAACAAGTA
ATCGAGTTCC TTGACACGTT GTCAGACGAG GCGGTGGCTC TTGGCGCGGT CAATACTATT
GTCCTTCGAG GTGGGCGAAG GCATGGGCAT AACACCGACT GGTGGGGCTT TGCTGAAAGC
TTCCGCCGTG GCTTGCCTCG TGCTGATCTG ACCTCGGTGG TACAGCTTGG AGCGGGTGGC
GCAGGTGCGG CCACCGCCTT CGCTATTCTC CGCTCCGGAG CGGCCGGACT GACGATATTC
GACCAGGACG AAAGCCGCTC GCTGGCATTG GTTGAGAATA TGCAGCGGCA TTTTCCGAAT
GCGTTCATTA AGGCTGGGGC CGACCTGTCA GGGGCAATGG CAACTGCCTC AGGGCTGATC
CATGCCACGC CGACGGGGAT GGCCAAGTAT CCAGGCCTGC CCGTGCCCGC TGATCTTCTG
CGCTTTTCCT TGTGGGTGGC CGAGGTCGTC TACTTCCCAT TGAGCACTGA ACTGGTGATC
GAGGCAGGCC GCCGCGGGTG TCGGACCCTG AATGGTGGGG GCATGGCGGT CTTCCAGGCT
GTGAAGGCTT TTCGGCTCTT TACCGGCGTC GAACCCAATG CCGAGCGGAT GCTGAAGCAT
TTTGAAGAGA TGACGCGCAC TCCCGGTAGA TCCGCAGTCG CGCCAGGGGA TGGCCGATGA
|
|---|
| Protein sequence | MKNVGIASFK AGLIGKGIQA SLTPALHMAE GRAQGFEYFY DLFDLDGVVG SSEPLTNLLA
EAEGRGLGGL NITHPFKQQV IEFLDTLSDE AVALGAVNTI VLRGGRRHGH NTDWWGFAES
FRRGLPRADL TSVVQLGAGG AGAATAFAIL RSGAAGLTIF DQDESRSLAL VENMQRHFPN
AFIKAGADLS GAMATASGLI HATPTGMAKY PGLPVPADLL RFSLWVAEVV YFPLSTELVI
EAGRRGCRTL NGGGMAVFQA VKAFRLFTGV EPNAERMLKH FEEMTRTPGR SAVAPGDGR
|
|---|
| |