| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5619 |
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| Symbol | |
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| ID | 5319921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 585732 |
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| End bp | 587312 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640777362 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001314294 |
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| Protein GI | 150377699 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02294] nickel ABC transporter, periplasmic nickel-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.4089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTGA ACAGGCGTAC GTTCCTGCAG GGCGCATTCG GCGCCGTGGG ATTGGTCATG
GCGCAGGGCG CCTTGTCCAA GCTTGTATAC GCGCAAGGGG CAAGCGGCAC GCTGCGGGTC
GCTATCGCAA AGCCCGCAGG TAACCTCGAT CCGCAAAGCC ACTACGCAAT CTGGGCGATA
CAGGACCTGA TGTTCGAACC GCTGGTCAAA TACGGCCGGG GAGGCCAGAT CGAACCTTGT
CTCGCGACCG ACTGGAAGAT CGAGGGCGGT GGCAAGACGC TACATCTCAC CTTGCGACAG
GGTGTTACCT TCCAGGACGG AACCAAGTTC GATGCCGCCG CGTGCAAGTG GAATCTCGAG
CGGTGGATGG GGCTCGACCA GTTCAGTTGG ATGAACTGCT CGAAGTATTT CGAGTCGCTC
GAAGTCGTTG ACGACTACCA CATCACCCTC CACTTCAACG AGCCCGTGCT GGCGCTGATG
CAAGAGCTTT CCTACACCCG GCCGCCACGC TTCCTCAGCC CGATGTCCGT TGGAGCCGAT
GGCAAGTTCA AAGAGCCGGT CGGTACGGGC CCTTGGCGCC AAGTCAAGGC GGATGACACC
GAAAGCGCAT TCGAGCGCTA CGACGGCTAT TGGGGTGACA AACCATCATA CGAGCGTCTT
GAGGCGAAGG TTATTCCCGA CCCGCGCTCG CGGGTCGCGG CACTGCGCAG CGGCGAGATC
GATCTGGTCG GCGGCTTCTG GATTGCGCCC TTGACCCCGG AAGAGGCCAA GCAACTCGAG
GCGGCCGCCG TCAACGTCGT CGTCGATCCG GGCAATGTTA CACTGGTGAT GGCGTTCAAT
CCCGATCGCG CCGCGGCACT CAAGGATTCG CAGGTACGCA AGGCGATCAG TATCGGCATC
GATCGTGCGG CAATCTCTCA GGTGCTCTAC CATGGCTATG CCAAGCCTGC GGGTAACTTG
TTCTCAAGCG CTTTGCCTTA TGCCGGCAAG CAGCATGGCG CTCCCGTCCG CGACGCGGCG
GCCGCGTCCG CGCTGCTGGA GAAGGCCGGC TGGACTGGTG GTCCTATTCG ATCCAAGGAT
GGCAAGCCGC TGACGCTCGA GATGGTCGTC AGTCCGGACG CAGTGCCGGG GTCACGGATC
ATCGCCGAAG TCATCCAGTC CGAGATGAAG GAGATCGGCA TCGACCTGGT GATCCGCTCG
GTCGACCATG CTTCCAAGCA CACCGACATG CTGGAACAGA AGTACGACCT CGGCTTCTTC
CTGACCTACG GCGCGCCTTA TGACCCGTTT GGCTCGATCG TCGGGCTGTG CCTGTCGACT
TTCAAGAATG ATGTCGAGGG CAAGCTGGTT ACCGATCCGG TTAACCTCGA TCCGTTGATC
AATGCGGCCA CGGCCGCAAC CGGAGACCAG ATCGAGCCGA CCATTCAGAA GGTCTACGAC
TGGCTGCGCG ACAACGACGC GATTGCGCCG CTGGTCTACG TACCAAGCAT CTGGGCGCAT
TCCAACCGGG TACAGGGCTT CACCAGTCCC GTCACCGAAT ACGACATGCC ATACGAAAAC
ATCGTTTTGG CCGCCGAGTA G
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| Protein sequence | MTVNRRTFLQ GAFGAVGLVM AQGALSKLVY AQGASGTLRV AIAKPAGNLD PQSHYAIWAI
QDLMFEPLVK YGRGGQIEPC LATDWKIEGG GKTLHLTLRQ GVTFQDGTKF DAAACKWNLE
RWMGLDQFSW MNCSKYFESL EVVDDYHITL HFNEPVLALM QELSYTRPPR FLSPMSVGAD
GKFKEPVGTG PWRQVKADDT ESAFERYDGY WGDKPSYERL EAKVIPDPRS RVAALRSGEI
DLVGGFWIAP LTPEEAKQLE AAAVNVVVDP GNVTLVMAFN PDRAAALKDS QVRKAISIGI
DRAAISQVLY HGYAKPAGNL FSSALPYAGK QHGAPVRDAA AASALLEKAG WTGGPIRSKD
GKPLTLEMVV SPDAVPGSRI IAEVIQSEMK EIGIDLVIRS VDHASKHTDM LEQKYDLGFF
LTYGAPYDPF GSIVGLCLST FKNDVEGKLV TDPVNLDPLI NAATAATGDQ IEPTIQKVYD
WLRDNDAIAP LVYVPSIWAH SNRVQGFTSP VTEYDMPYEN IVLAAE
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