| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5471 |
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| Symbol | |
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| ID | 5319773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 439329 |
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| End bp | 441095 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640777232 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001314164 |
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| Protein GI | 150377569 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I
[COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGTCGT CATCAGTTTC CTCATCCCCC CCGATGCCCG CGTGGATTGG ACACGCTGCG
AAAATCGCGC CTCTGATGGT GCTTCTGCTG GCGTTCCTGG TCTATCCGGT CGGACAATTG
CTGTCACTGA GCTTCCTCGG CGAGGACGGA TTCTCGTTGG CCTTCTACAA GCAGCTCTTT
GCGTCATCGC TTTATCTCAA CGTTCTCTGG ATCACCCTGA AGATTTCGCT GGCGACCACC
GCTCTTGCCG TGATCTTGGG CTATCCCGTC GCCTATCTCA TCTCGACTTC GGGCCACGGG
ACAAAAAGCC TTCTGGTCTT TCTCGTGCTT CTGTCGTTCT GGACCAGCTT TCTCGTGCGA
GCATTCGCGT GGGTGGTGAT CCTCGGGCGC AACGGCGTGA TCAACCACAC GCTGCTGTCG
GTCGGCGTCA TCGATCGGCC GGCCAACCTT CTCTATGGGA CAGGCGCGGT TCTCGTCGGT
ATGGTCCACG CCATGCTACC GCTGGCGGTG ATGACCATGC TTGCCGTGAT GGAAAATATT
GACCGGAACC TGCCGCGCGC GGCTTCCACC CTGGGTGCTC GCCCGGGCTC GGCATTCTGG
ACCGTGTATT TTCCGCTCTC CATGCCGGGC GTCGCCGCCG CCGCCATCAT GGTGTTCGTG
ACCGCCATCG GCTTCTTTAT CGTGCCGGCC CTGCTTGGCG GACGTTTCGA AACGATGATC
TCGCAGCTTA TCATCGATCA GGTCCAGCAA ACGCTGAACT GGGGGCTTGC CGGTGCGATC
GCGGTGCTTC TTCTCGTCGT CGTCATGGCA GTCTTCATCG TCTACGACCG GGTATTCGGC
TTTGCGACCC TTACCGGCGA AAGTGGAGCC AATGTCACGA GCCGCGACAG CGCGACCCGC
CGAGCCGGCG CCAAGTTTCT TGCTATGCTT GGCGAAGCGA CCGACAGGCT TCTGGCGATC
ATGCCAGGCA ACGGGCAGAG CACGGATGCG GAGCGTGCGC CATTGCTGCT CAGGCTCTTC
GTCTGGTCAA TCCTGGTGCT TATCAGCATT CCGGCCGTCC TGATGGTTCC GATCTCGTTC
AGTCAGGCGG GATTGAACTG GCCGCCTACG GGCTTTACCA CTCAGTGGTA TTCGCAGATG
TGGGCGAACC CTGTCTGGTC GCAGGCCCTG TTGAGATCGC TGACCGTTGC GCTGGGTGCG
GGTGTTTTGT CCATGTTGGT CGGCGTCCCG GCCGCGTTCC TGCTGGCACG CGCTGACATC
CGGGGCAAGG CGGCGATTCT CGCTTTCGTT CTGTCTCCGA TCGTCGTCCC GCGTATCATC
ATCGCAGTCG GCATGTTCTA TGTCTTTGCG AGGTTGGGCC TCGTTGGAAG CGCGCTCGGG
CTCATTATCG GTCACACTGT CGTCTGTGTC CCCTATGTCG TCCTGACACT GGTCGCGGTT
CTGCGCAACT ACGACACGCG ATTGGATCTC GCCGCCTACA GCCTCGGCGC GACCCCGCTC
AAGGCGCTGA TCCGCGTGAC TTTCCCGATC TTGGGGGCGG GGATGTTCTC TGCGTTCCTG
TTTGCCTTCG CGACTTCGTT CGATGAACTC ACCATCGCCC TGTTTTCGTC CGGCGGCCTC
AACGCCACGC TGCCGAAGCA GTTCTGGGAC GAAGTGACGT TGCAAGTCTC GCCTGTGATC
GCGGCTGTCT CTACCTGCCT CCTGGTCTTC GTCTCGGTGC TGATCTTCGC CGCGGACCGG
CTGCGGCAGC GCAGCGTGGC ACGCTGA
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| Protein sequence | MRSSSVSSSP PMPAWIGHAA KIAPLMVLLL AFLVYPVGQL LSLSFLGEDG FSLAFYKQLF
ASSLYLNVLW ITLKISLATT ALAVILGYPV AYLISTSGHG TKSLLVFLVL LSFWTSFLVR
AFAWVVILGR NGVINHTLLS VGVIDRPANL LYGTGAVLVG MVHAMLPLAV MTMLAVMENI
DRNLPRAAST LGARPGSAFW TVYFPLSMPG VAAAAIMVFV TAIGFFIVPA LLGGRFETMI
SQLIIDQVQQ TLNWGLAGAI AVLLLVVVMA VFIVYDRVFG FATLTGESGA NVTSRDSATR
RAGAKFLAML GEATDRLLAI MPGNGQSTDA ERAPLLLRLF VWSILVLISI PAVLMVPISF
SQAGLNWPPT GFTTQWYSQM WANPVWSQAL LRSLTVALGA GVLSMLVGVP AAFLLARADI
RGKAAILAFV LSPIVVPRII IAVGMFYVFA RLGLVGSALG LIIGHTVVCV PYVVLTLVAV
LRNYDTRLDL AAYSLGATPL KALIRVTFPI LGAGMFSAFL FAFATSFDEL TIALFSSGGL
NATLPKQFWD EVTLQVSPVI AAVSTCLLVF VSVLIFAADR LRQRSVAR
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