| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5416 |
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| Symbol | |
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| ID | 5319718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 380168 |
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| End bp | 381772 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640777182 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001314114 |
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| Protein GI | 150377519 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.604179 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAATAC GAAGCAGGTT TTGTTCACAT TGGCTTGCCG CATTGCTGCT CTCGCTCACC
TTCTGGAGCG GTCTTCCAGG GTCTGGTCAT GCGCAGGAGG AGCTTCGGAT CGCAACATCG
TACAAGCTGA TGACACTCGA TCCGCATTAC GCAAATCTCA ACGAAAACAC CTCGCTGCTC
TCCCATATCT ACGAGCGTCT GGTCTACCAG GATGACCGTC TCGATCTGAA ACCGGGTCTG
GCCGTCTCCT GGCGCGCGGT GTCGGACAGG CAGTGGGAGT TCAAGCTTCG CGAGAATGTC
CGCTTCCATG ACGGCTCGCC CTTGACGGCG GACGACGTCG TCTACACGAT CGAGCGCATA
CGGGATTTCC TCAAATCCCC GAGCGGCGGC TTCCGGTCCT ATGTGACCGG CATCGAATCG
GTCTCGGCAC CCGATCCTCT CACCGTCGTC ATCGACACCA AGGGCAATAT CCCCAACCTG
CCGCTGTCGT TCTCGTCGAT CTTTGTGATG AACCGGCCGG CACAGGGGTT CCAGACCACC
GAAGAGCTCA ATGCCGGCAG GGCCGGCCAC CCTCCGGTCG GCACAGGGCC GTATACATTC
GAAAGCTGGA GTTCCGGCGA GGTGCTGAAG CTCGCCAGGA ACGATGATTA CTGGGGCGGC
AGGCCTGGCT GGCCGCAGGT CACGTTTCGG GTCATCGAAA GCCCGGCTGC CCGCGTGGCG
GCACTCAGCA CCGGCGAAGT CGACCTGGCG GATGCTATTC CCGCACGCGA CGTTGCCTCT
TTGAAGCAGC GCGGCGCCAG GATAGCCAGC GTCGGCGCGG CGCGGATCAA CTTCCTGCAG
TTCGACGTGG AGCGAGACAG GCTTCCCGGC GTGACCGATA AGTCCGGCGA GCCGATCGCC
AATCCGTTCA AGGACGCCTT GGTCCGTCGT GCGCTCGCCA TGGCCACCGA TCGCGGAATT
CTGGTCGACA AGATCCTCTC GGGCTATGGC ACGGCCGCAG CCCAGCTCTT TCCCGGCGGC
TTGCCGGGTA CCTCGGAAAC CTTGCAGCCG GAGGCTCCGA AGTATGACGA AGCCAAGGCG
CTTCTCGCAA AGGCTGGTTT CCCTGACGGT TTCAACCTCA TTCTCGCCGG ACCTGCCGGG
CGTTATCCCG GCGACGGCGA GAGCCTTCAG GCGATTGCGC AAAGCTGGGC CCGCATCGGA
GTAAAGGTGC AGCCGGCGGC GGCGCCGTTT TCGGTTTTCA ATACAAAGCG TGCCGCCGGC
GACTATGCCG TCTGGTACGG CGGCGCTTCC GGCGAAGCGG TGGACATCAT CCTCCACGCT
CTGCTGGCCT CACCGGACCC TGAAAGCGGG AACGGCGCCT TGAACTTCGG GCATTATCGC
AACCAGGCTT TCGACGCGAT GCTCGCAAGG GCGGAAAGCA TCCAGGAGGG CCCTGAGCGC
AACAAGGCGC TCGCCGAAGC GACCGAGTTC GTGATGGCCG ATCAGCCGAT CATACCGCTT
TACCACTTCC ATCACATCGT CGGCTACGGC CCGCGCGTTG CCTCCTATGC GATGCATCCC
CGCGGCTGGA CCACGGCGAT GCAGACGCTT GCCGCGACGG AGTAA
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| Protein sequence | MQIRSRFCSH WLAALLLSLT FWSGLPGSGH AQEELRIATS YKLMTLDPHY ANLNENTSLL
SHIYERLVYQ DDRLDLKPGL AVSWRAVSDR QWEFKLRENV RFHDGSPLTA DDVVYTIERI
RDFLKSPSGG FRSYVTGIES VSAPDPLTVV IDTKGNIPNL PLSFSSIFVM NRPAQGFQTT
EELNAGRAGH PPVGTGPYTF ESWSSGEVLK LARNDDYWGG RPGWPQVTFR VIESPAARVA
ALSTGEVDLA DAIPARDVAS LKQRGARIAS VGAARINFLQ FDVERDRLPG VTDKSGEPIA
NPFKDALVRR ALAMATDRGI LVDKILSGYG TAAAQLFPGG LPGTSETLQP EAPKYDEAKA
LLAKAGFPDG FNLILAGPAG RYPGDGESLQ AIAQSWARIG VKVQPAAAPF SVFNTKRAAG
DYAVWYGGAS GEAVDIILHA LLASPDPESG NGALNFGHYR NQAFDAMLAR AESIQEGPER
NKALAEATEF VMADQPIIPL YHFHHIVGYG PRVASYAMHP RGWTTAMQTL AATE
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