Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5278 |
Symbol | |
ID | 5319580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 238511 |
End bp | 241849 |
Gene Length | 3339 bp |
Protein Length | 1112 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640777055 |
Product | peptidase domain-containing protein |
Protein accession | YP_001313987 |
Protein GI | 150377392 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGAACC CTAGCCAGAT CAGCGACAAT TGGTGGATCA ACGATCAGAC GCCGGATAAT CCTTATGGAA AGAGCGAGGA TTACGAGTCC TTTCTCGACT ATCTTGGCGC ATTACCCCGC AGCCTGACGC CGGAAATGGC TGCGGGAACG CTGAGGATCA ACGTTTACGA GCTCAACGAT CACCCGGAAT ACAAGGCGGC TGCGATCGGC GCCCTGCAGA TGTGGGCGTC TGTCACCCCC CTGAAATTCG AGGTCGTCGA CGACACGCCG TTCGACAGCT CAACGGACTG GATGGAGGTC GTCAGCCCCG AACTCGGTGA AGAGGACGAC GGCAGCGCCT ATTCGAGCAA TCGTTATGTC AGCATCGGCC AGCGTTTCCA CGACACCGAA CCCAACAAGA CGGATATCGG CGGTTATGTC TTCGATTCCT TCATCCATGA ATTCGGCCAT GAATTCGGGC TGAACCATCC GGGGCTCTAC AATTACAGCG GTCCCGGCGG CGTGCAGATC AACTATCTGA ACAATGCGAC CTGGACCTAT GATCGCCAGC AATACAGCGT GATGTCCTAT TTCGACGGAA TCGATGTCGG GGAAACCAGC CGCTGGTCTG CCTCCACGCC GCTCATGGCC GACATCGAGG CCGTCATCCG CCGCTTTTTC TCGACCGTCG ACGAGAATGG AGTGCGGACC TATCAGCATA TCGAGCTCAA CACGGGAGAC AATGTCTACG GCTTCGGGAG CACGCAGTAC GGCTACCAGC TGACCTCCTC GGGCATGCAG CATGACATCG GCTTTGCGAT CCATGACACG GGTGGGGCCG ACACGATCGA CTTCTCCGGC TCGACTGCGG GTACCATTCT CGACTTGCGT GCCGGACAGT TCTCCAGCGT CAATGGGCAC AGCAACAACG TGTCGATCTT CGCCGGACAC AATGCGGATG AGACCGACTA TTACATTGAT AACGGCATCG GCAGCAGGTT TGACGACATC CTGATCGGCA ATGACGGCGC CAACACGCTG GATGGCCGCG GCGGCGGCGA CCGCATGGCA GGCAACGGCG GTGACGACAC ATATTTCGTC GATTCAATTG ACGATATCGT TCGTGAGGAG GCCAACGGCG GCAACGACAC GGTCATCCTC CTGTCCAGGC ACCTGAAAAT CAGGAAAATT GCCAACGTCG AAAACATCAT CTATGCCGAC GAGACGACGA CGCAGCCTGG CGGTGGCGCC GAGACCCCGC CCAGCGCCGG CGATAACACG ATGACCAGCA TCATCTTCGG CGGTAGCGGA AATGACATTC TCGACGGCGG CGCCGGTGAC GACACGATCT TTGGCCAGGG AGGCGACGAC CTGATCATAG GCGGCCGCGA CTCGCTCGCC AGCCGCGACA TCAACAATAC GATCGACGTC GAAGACCTCG AAGACCAGAC CGAGAGCGAC GACGGGAACG ATACGCTCTA CGGCGGCGGT GGCAACGACA CCATCCTTGG CGGGCAGGGC AACGACATTC TCGACGGCGG CGCCGGAGAC GATACGCTGA GCGGTCAGGA CGGCATAGAT ATATTCAGGG GTGGCGAGGG CACCGATACC GTCGATTTCA GCAAGGAGAG CCCGTTCCAG CTGCTCGTCA ACCTTGCCAC GAATGTCGCC AGCGGCGGAA CCGCCTCGGG CGACACTTTC TACAGCATCG AGAACCTGAT CGGATCCGAC GATCGCATCG ACCGGTTCAT CGGCACATCC GCCGCAAACC ACTTCTGGGG GCAGGGCGGC GGCGATTATT TCAATGGCGG CGGCGGCAAC GACACCCTGG ACGGCGGCAA TGACGGCGAC ATCCTTTATG GCGAAGCCGG CAACGACACG ATCATCGGTG GCGCCGGCCA AGACTATCTG GACGGTGGTT CCGGTGTCGA CACGGTCGTC TACGCGGGCA GCCCCGATGG TGTGACGATC GATCTTGCCG AGGGCACGGC CTGCGGTGGC GACGGTGACG GTCCGGTGCA AATCGTCGGT CGGGGCGCGG TTATCCGGCA CGATATTCTC GCCGGCTTTG AAAATGCCGT CGGTTCGTCA TTTGACGACC ATCTCATCGG CAATGCCCTG GCCAACGAGC TTTCCGGCGG CGCCGGCGAC GACAGATTGA CCGGTGGAGG CGGCGCCGAC AGATTGAACG GCGGCGCCGG CAGCGATACG GCAGACTACG CCGACGCGAC GAGCGGCGTC AGACTGAGCC TCGCTGGACG CAAGTCCGGC GGAGATACAT ATGTCTCCAT CGAAAATCTT GCCGGTTCGG GATTCAATGA CCGGCTGACC GGCGACGGTG CCGCCAACGT GTTGACCGGC CAGGGCGGAA ACGACACGAT CGACGGCGGC CGCGGCGATG ACACGCTGCT CGGCGATTTC GCCTATCAGG GCGACGCGCC CCCACGCCCG GGAATGGGAA CCGGCTACGC CACGCTGGGA CCGGACGCGA CCAACAATTC GATAGCGGCC GCGTTCGACA TCTCCGACAA CTTCTCCTTG ACCAGCGATC CCGATATCTT CGATTCGACC ACGACCCTTC ATACGACCGT CAACGCCACC GGAAATGGCC AAGGCGGATA CTATAAAATC GATCTGGCGG CCGGTACGGT CATTACGATC GACATTGACG GCATTGCCGA TCCTGATGTC CATGACAGTT GGGTCAGGCT GCTCGACAGC GCCGGCAACA TCGTTGCGCA GAACGATGAC GGCGGCGGCG ACCCCGGTTC TACCAGCAAC CGGGATTCAA GCCTCGTATT CGTGGCTCAG GAGACCGGAA CCTATTACAT ATTGGAAGGC AGCTGGTCAC CGACGGCGCC GGGCGATGGC TGGGCGGAGG CCGTGCCGGC AGGCTCGACA TATGAGTTGA ACGTATCGGT CGAGTTTCCC CCTGCGCCGG CCCAGCCGGG CGTTTCCGGC TCTGACACTC TCATTGGCGG CCGAGGCAGC GATCTGCTGG ATGGCGGCCT GGGGGCGGAC ACGCTTATCG GCGGAGCGGG GGAAGATACG TTCCGCTTCT CGACGGCGCT TGGGAACGGC AATGTCGACG GTATCAGGGA GTTCGATGTC ATCGACGATA CGATCCTGCT GGACAACCTC ATCTTCGAGA GCGTGGGTGG CGACGGCGCT CTCGCCTTTG GCGCATTTTT CGGGAGCGCG GGCGGCCTCG CCCATGATGC CGACGACCGC ATCATCTACG ATACCGATAG CGGCGTCCTG TCCTATGACG CCGATGGCGC CGGCGAGATC GCGGCAATTC AGTATGCGCA GCTGAGCACA AATCTGAAGC TATCGGCGGC CGACTTCATT ATTATTTAG
|
Protein sequence | MPNPSQISDN WWINDQTPDN PYGKSEDYES FLDYLGALPR SLTPEMAAGT LRINVYELND HPEYKAAAIG ALQMWASVTP LKFEVVDDTP FDSSTDWMEV VSPELGEEDD GSAYSSNRYV SIGQRFHDTE PNKTDIGGYV FDSFIHEFGH EFGLNHPGLY NYSGPGGVQI NYLNNATWTY DRQQYSVMSY FDGIDVGETS RWSASTPLMA DIEAVIRRFF STVDENGVRT YQHIELNTGD NVYGFGSTQY GYQLTSSGMQ HDIGFAIHDT GGADTIDFSG STAGTILDLR AGQFSSVNGH SNNVSIFAGH NADETDYYID NGIGSRFDDI LIGNDGANTL DGRGGGDRMA GNGGDDTYFV DSIDDIVREE ANGGNDTVIL LSRHLKIRKI ANVENIIYAD ETTTQPGGGA ETPPSAGDNT MTSIIFGGSG NDILDGGAGD DTIFGQGGDD LIIGGRDSLA SRDINNTIDV EDLEDQTESD DGNDTLYGGG GNDTILGGQG NDILDGGAGD DTLSGQDGID IFRGGEGTDT VDFSKESPFQ LLVNLATNVA SGGTASGDTF YSIENLIGSD DRIDRFIGTS AANHFWGQGG GDYFNGGGGN DTLDGGNDGD ILYGEAGNDT IIGGAGQDYL DGGSGVDTVV YAGSPDGVTI DLAEGTACGG DGDGPVQIVG RGAVIRHDIL AGFENAVGSS FDDHLIGNAL ANELSGGAGD DRLTGGGGAD RLNGGAGSDT ADYADATSGV RLSLAGRKSG GDTYVSIENL AGSGFNDRLT GDGAANVLTG QGGNDTIDGG RGDDTLLGDF AYQGDAPPRP GMGTGYATLG PDATNNSIAA AFDISDNFSL TSDPDIFDST TTLHTTVNAT GNGQGGYYKI DLAAGTVITI DIDGIADPDV HDSWVRLLDS AGNIVAQNDD GGGDPGSTSN RDSSLVFVAQ ETGTYYILEG SWSPTAPGDG WAEAVPAGST YELNVSVEFP PAPAQPGVSG SDTLIGGRGS DLLDGGLGAD TLIGGAGEDT FRFSTALGNG NVDGIREFDV IDDTILLDNL IFESVGGDGA LAFGAFFGSA GGLAHDADDR IIYDTDSGVL SYDADGAGEI AAIQYAQLST NLKLSAADFI II
|
| |