| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5196 |
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| Symbol | |
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| ID | 5319498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 153240 |
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| End bp | 155510 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640776974 |
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| Product | lysine decarboxylase |
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| Protein accession | YP_001313906 |
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| Protein GI | 150377311 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.586753 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGTTCT ACAAGGCATT CCCCATCGCT GTCATCGATG AAGATTACGA GGGTAAAAAC
GCTGCCGGGC GGGGCATGCG CAGCCTCGCA GAGGCGATTG AAAAGGAAGG TTATCGGGTC
GTTGGAGGCC TCACCTATGA GGATGCACGC CGCCTCGTCA ACGTCTTCAA CACCGAGTCC
TGCTGGCTGA TTTCAGTCGA CGGGGCGGAA TCAAGTACGA CGCGATGGGA GATTTTAGCC
GAGCTGCTCG CCGCGAAACG CTCCCGGAAC AACCTGCTGC CAATCTTTCT GTTTGGCGAC
GATACAACGG CGGAAATGGT GCCGGCGCCC GTGCTGCGCC ACGCCAATGC CTTCATGCGT
CTCTTCGAGG ATTCTCCGGA ATTCATGGCG CGCGCAATCG TGCGCGCGGC GCAGAATTAT
CTGGAGAGGC TTCCGCCTCC AATGTTCAAG GCGTTGATGG AATACACGCT TCACGGCGCC
TATTCCTGGC ACACGCCAGG GCACGGAGGC GGGGTGGCAT TTCGCAAGAG CCCGGTGGGG
CAGCTCTTTT ATGCGTTTTT CGGAGAGAAC ACATTGAGGT CGGACATTTC TGTGTCCGTC
GGCAGCGTTG GTTCGCTCCT CGATCATGTT GGGCCGATTG GCGAGGGTGA GCGCAATGCT
GCGCGCATAT TTGGTGCGGA CGAGACGCTG TTCGTTGTCG GCGGCACATC GACCGCCAAT
AAGATCGTGT GGCACGGTAT GGTCACTCGC AACGACCTCG TCCTCTGCGA CCGAAACTGC
CATAAATCGA TCCTGCACTC GCTGATCATG ACGGGTGCGA CGCCGATTTA CCTGACGCCC
TCACGCAACG GCCTCGGCAT CATCGGCCCA ATTGCGAAGG AGCAGTTTAC CCCGGAGGCA
ATCGCGCAGA AGATCGCCGC CAGTCCGTTT GCCGGTGAGA CGAACGGTAA AGTGCGCCTG
ATGGTGGTGA CAAACTCCAC ATATGATGGG CTCTGCTACA ACGTAGATGG AATCAAAGCG
GCGCTCGGCG ATGCGGTGGA GGTACTGCAT TTCGACGAGG CCTGGTTTGC TTACGCCAAT
TTTCACGAAT TCTACGATGG TTATCACGCG ATCTCTTCGA CGAAGCCCGC GCGTTCGCAA
GAAGCCATAA CATTCGCAAC CCAGTCGACG CACAAGCTGC TGGCCGCCTT CTCTCAAGCT
TCAATGCTTC ATGTGCAGCA TGCCGAGGCG AAGCAACTCG ACATCACACG CTTCAACGAA
GCGTTCATGA TGCACACATC GACATCGCCG CAATATGGGA TCATCGCCTC GTGCGACGTG
GCTGCTGCCA TGATGGAGCA GCCGGCCGGG CGGGCGCTGG TACAGGAGAC CATTGACGAG
GCCATGAGTT TCCGCCGAGC CGTCAATGCG GTGCGGACAC AGATGCAGGA TTCCTGGTGG
TTCGAAGTCT GGGAGCCCCC CATCGCGGAT CGGGCACCGA GCGACGCCAA GTCGGATTGG
GTTCTAAAGC CCGGTGATGC GTGGCATGGC TTCGAAGACC TAGCTGAGAA TCACGTGATG
GTTGACCCTA TCAAGGTCAC AATCCTTTCG CCCGGGCTCA ATGCGGGCGG AACGATGCTG
GAGCATGGTA TTCCGGCCGC AGTCGTTACG AAGTTCCTTT CTTCTCGCCG GATCGAAATC
GAGAAAACCG GGCTCTACTC TTTCCTGGTG CTCTTCTCCA TGGGGATCAC AAGGGGCAAG
TGGAGCACCC TGATCACCGA GCTCTTGAAC TTCAAAGACC TCTATGATGC CAATGCCCCT
CTTTCACGCG CCCTTCCCGC CCTCGCGGCA GCCCATCCGG ACGTCTACCG GACAATGGGC
CTCAGAGATC TTTGCGAGAA AATTCACGAC GTGTACCGCA GCGACGACGT GCCGAATGCC
CAGCGCGAGA TGTACACCGT GCTGCCCGAA ATGGCACTGC GCCCGGCGGA CGCCTACAAC
CGTCTGGTCA AGGGGTGCGT CGAGAGCATT GATATCGACG AACTGATCGG CCGGACACTC
GCAGTCATGA TTGTACCCTA TCCGCCGGGA ATCCCGCTCA TCATGCCTGG TGAGCGGATC
ACCGCCGCCA CCAGATCAAT CCAGGACTAT CTCGTCTACG CCCGGAGTTT CGACAAAAAA
TTCCCGGGAT TTGAGACAGA CATCCACGGA CTCCGTTTCG TCGCGAACCC GAGTGGACGG
AGATATCTCG TGGATTGCAT CGTCGAGGAG GGGCAAGATG ATACCGCGTG A
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| Protein sequence | MEFYKAFPIA VIDEDYEGKN AAGRGMRSLA EAIEKEGYRV VGGLTYEDAR RLVNVFNTES
CWLISVDGAE SSTTRWEILA ELLAAKRSRN NLLPIFLFGD DTTAEMVPAP VLRHANAFMR
LFEDSPEFMA RAIVRAAQNY LERLPPPMFK ALMEYTLHGA YSWHTPGHGG GVAFRKSPVG
QLFYAFFGEN TLRSDISVSV GSVGSLLDHV GPIGEGERNA ARIFGADETL FVVGGTSTAN
KIVWHGMVTR NDLVLCDRNC HKSILHSLIM TGATPIYLTP SRNGLGIIGP IAKEQFTPEA
IAQKIAASPF AGETNGKVRL MVVTNSTYDG LCYNVDGIKA ALGDAVEVLH FDEAWFAYAN
FHEFYDGYHA ISSTKPARSQ EAITFATQST HKLLAAFSQA SMLHVQHAEA KQLDITRFNE
AFMMHTSTSP QYGIIASCDV AAAMMEQPAG RALVQETIDE AMSFRRAVNA VRTQMQDSWW
FEVWEPPIAD RAPSDAKSDW VLKPGDAWHG FEDLAENHVM VDPIKVTILS PGLNAGGTML
EHGIPAAVVT KFLSSRRIEI EKTGLYSFLV LFSMGITRGK WSTLITELLN FKDLYDANAP
LSRALPALAA AHPDVYRTMG LRDLCEKIHD VYRSDDVPNA QREMYTVLPE MALRPADAYN
RLVKGCVESI DIDELIGRTL AVMIVPYPPG IPLIMPGERI TAATRSIQDY LVYARSFDKK
FPGFETDIHG LRFVANPSGR RYLVDCIVEE GQDDTA
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