| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5195 |
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| Symbol | |
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| ID | 5319497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 150890 |
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| End bp | 153253 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640776973 |
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| Product | ornithine decarboxylase |
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| Protein accession | YP_001313905 |
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| Protein GI | 150377310 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.208108 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.398466 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACCGC GTGATGTGAA GGCTCCGACC GTCCCCATTC CATTCCACAA GCTGCTCAAG
GTCGTGGCAT TCGTCGACGA AAGCAATCTG GAAACGAAGA GACTTCTTTC GCACATTGTG
GCGGAAAATT TCGAAGTCGA GTTGCGCGGC AGCTACACCG CCGACGTGTC CGAGGACGCT
TCGGTTGGCG CCTATATTGG GACCGTCGAG GGCGGACGGC TCGAAGATGC CCGCAAGTTC
GTCCGTGCGG TCAGAGACAT CGGATTCCGC ACGCCGCTAT GGGCCCTTGC AGACTCCCAC
GGTATTGCGG ACATCGCGGC GATAAAAATG GCCGGTGAAG TGGATGGCTT CGTTTATCTT
GGGCAGCAGA CACCGGCGTT CTACGCAAAG CAGATCATTT CAAGTCTGGT CAATTACGGC
AAGACGCTCC TCCCGCCGTT TTTCGGCGGC CTCATGGCTT ACGATGGAGA AGCCAACATT
GCGTTCGACT GTCCCGGACA CCAGGGCGGA CAGTTTTACC GGAAGTCGCC CGCAGGCCAG
CTCTTTTTCA ATTATTTCGG CGAAAGCATA TTTCGCGCCG ATCTTTGCAA TGCCGATGTC
GACCTGGGCG ACCTGCTGAT ACATGAAGGG CCGGCGGCCG AGGCGCAGAA GAATGCAGCA
AGGATTTTCG GCGCGGACCG GACCTACTTC ATTTTGAACG GCACAAGCAC ATCAAACAAA
GTGGTTACGA ACGCGGTACT GCGCGCAGGC GACCTCGTGT TGTTCGACCG CAACAATCAC
AAGTCGCTTC ACCAGGGCGC GCTGGTGCAG GCGGGAGCGA TACCAATTTA CCTGCCGACC
GCGCGCAACT CGTTCGGGAT GATCGGTGCC GTGGACTGGG ACGCCTGGGA CGAAGCGAGC
CTGCGCCGGC AGATCGAAAG GCATCCTCTG GTCGAGGACA AGACGCGGGC CAGTGCAGAG
CGACCGTTCC GACTCGCCTG CATCCAACTT GCGACCTATG ACGGCACTAT TTACAACGTC
CGCAAGGTGT TGGAACAGAT CGGACACCTG TGCGACTACG TACTCTGGGA CGAGGCGTGG
ATCGGCTACA ACGCTTTCCA CCCATTGTTT GAAGACCACA GTCCGATGCG AATCGACACG
CTTGATGCCG AAATGCCGGG ATTGTTCTCA ACGCAATCCG TCCACAAGCA AGGGGCCGGC
TTTTCGCAAG CCTCGCAGAT TCACAAGCGC GACGAGCACA TCCGTGATCA GCGCCGCTAC
GTCGAACATA AGCGCTTCAA CGAGTCGCTT CTCATGCATG TTTCGACTTC ACCCTTCTAT
CCGCTATTCG CCTCGTTGGA CGTCAACGCC AAGATCCACG AGGGCAAGGC TGGCGAAATG
CTCTGGGATC GCTGTATCGA GCTGGGTATC GAGGCACGCA AGAAACTGAG AGAATTCACC
CGGTACTACG AATCGACGGG TGCGGGGCCC CAGGAGCAGT GGTTCTTCGA CCCCTTCGTA
CCCGATTTCG TCACGATCTC GGACTCCAAA CATACGAAGG ATGTTGTCGA GTCCCGTTGG
GAGGCGCTCC CGACGGAGGT CATCAAACGG GAACAACAGT GCTGGCGCTT CCGTCCAGGG
GCTTCATGGC ATGGATATTC CGGCTATTCC GATGGCTACG CAATGGTGGA TCCAAACAAG
CTCACGCTTC TCACTCCAGG CATAGACCGT GCGACGGGGG AGTATCGAGA CTTCGGCATC
CCGGCAACGA TCGTTGCCAA CTATCTTCGC GAACAGCGCA TCGTTCCCGA GAAGTGCGAC
CTCAACAGCA TACTGTTTCT GCTCACACCG GCCGAGGACG AGAGCAAGCT CAACACGCTG
ATAGCCAAGT TGGTGAAGTT CAAGAACTTG TGGGACCGGG ACGCGCCTTT GGCCGAGGTT
CTACCTACCG TGTTTGCGGC GAACAGAGAG CGCTATGCAG GATACACACT CCGGCAGGTC
TGCGCAGAGA TGCACGACTT TTATCGGCAA GCAGGGGTGA AGGAATTGCA GCGTCTCTGC
TTCCGGGGGG AGAGCATGCC CGAGCCCGCA ATGGCGCCGA AAGCGGCTTA TGAAGCTCTC
GTGGCAAACG AAGTTGATTA TGTGGCACTC GACGAGGTTT TCGGCAGGAT TTCGGCCACG
CTCGCGTTGA TCTATCCGCC GGGCATAGGC GTCATAGTCC CCGGGGAGCG CTGGGACGAA
AGGGCGCGGC CGATGCACAA CTATTTCCTG GCATTCCAAG AGTCCTTCAA CCGCTTCCCC
GGCTTCAATT ACGAGGTCCA GGGTGTGTTT CAGGAGCGAG TTGACGGCCA GATCAAGTTC
TACACCTACG CCGTGCGCGA GTAA
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| Protein sequence | MIPRDVKAPT VPIPFHKLLK VVAFVDESNL ETKRLLSHIV AENFEVELRG SYTADVSEDA
SVGAYIGTVE GGRLEDARKF VRAVRDIGFR TPLWALADSH GIADIAAIKM AGEVDGFVYL
GQQTPAFYAK QIISSLVNYG KTLLPPFFGG LMAYDGEANI AFDCPGHQGG QFYRKSPAGQ
LFFNYFGESI FRADLCNADV DLGDLLIHEG PAAEAQKNAA RIFGADRTYF ILNGTSTSNK
VVTNAVLRAG DLVLFDRNNH KSLHQGALVQ AGAIPIYLPT ARNSFGMIGA VDWDAWDEAS
LRRQIERHPL VEDKTRASAE RPFRLACIQL ATYDGTIYNV RKVLEQIGHL CDYVLWDEAW
IGYNAFHPLF EDHSPMRIDT LDAEMPGLFS TQSVHKQGAG FSQASQIHKR DEHIRDQRRY
VEHKRFNESL LMHVSTSPFY PLFASLDVNA KIHEGKAGEM LWDRCIELGI EARKKLREFT
RYYESTGAGP QEQWFFDPFV PDFVTISDSK HTKDVVESRW EALPTEVIKR EQQCWRFRPG
ASWHGYSGYS DGYAMVDPNK LTLLTPGIDR ATGEYRDFGI PATIVANYLR EQRIVPEKCD
LNSILFLLTP AEDESKLNTL IAKLVKFKNL WDRDAPLAEV LPTVFAANRE RYAGYTLRQV
CAEMHDFYRQ AGVKELQRLC FRGESMPEPA MAPKAAYEAL VANEVDYVAL DEVFGRISAT
LALIYPPGIG VIVPGERWDE RARPMHNYFL AFQESFNRFP GFNYEVQGVF QERVDGQIKF
YTYAVRE
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