| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5113 |
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| Symbol | |
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| ID | 5319415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 62783 |
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| End bp | 65998 |
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| Gene Length | 3216 bp |
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| Protein Length | 1071 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640776891 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001313823 |
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| Protein GI | 150377228 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00592248 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACGCAC CGACGCCTGA AGGGCCCTCC CGTAGATCCT ATAATCTGTT CCAGTACCTT
ATGGATGGCG TTGCCGAACC GGTCATCGTC AAGGATGCCG GATCGCGCTT CGTCTTTATC
AATGAAGCCG CATGCTTCCT TCTCGACAAA GATCGCAATG AGCTCCTCGG GCGAACCGAC
CACGACCTGT TACCGACGGA GCAGGCGGAC AAGATCGTCG CGCTGGACAG GGTGGTGCTT
TCCACAGGCG AAGGTCACGA GATCGAAGAG CAGATCACGA CGCCGGATGG CACCTCACGG
ACGCTCCTGA CGAAAAAGCG ACCCGTGAGC ATCCCCACGG GTTCGACCGA GGAGAAGTTC
GTGGTCGTGA CGATCGTGGA TATCACCGAA CTGCGGGGGA TCGAAGAGAC CCTCCGGGCA
AGCGAAGAGC ACTACCGCTC CCTGGTCGAC CTTCATCCGC AGGTTCCCTG GATTGCAGAC
AGGGCGGGAG AGGTGCTGGA GGTCGGGCCG CGATGGAGCG AACTGACAGG GCTGGGCGAA
AAAGAGACGC TCGGCAAAGG GTGGGCGAAA GCCGTTCATC CGCAGGACGC AGGTGCTTTG
CAAGATGCGT GGCGCCGGTC CCTAACGAAC GGCACGCCTT TAGACTGGGA ATATCGACTT
CTGACCATGA CCGGCGAATA TCGCTGGTTC CGCGCTCGCG CCGCCGCAAA GCGCGACGCC
GACGAAAAAA TAGTGCGTTG GTACGGCCTT CTGGAAGATG TCGACGAAAG GAGGCGCGCC
GCCGATGCCT TGCGCGAAAG CGAGGCTCGC TTTCGCGCAA TCGCCGACGA TGCCCCCGTG
ATGATCTGGG TCGCCGACCC AACGGGCGAC ACGAGTTTTT TCAATCGCCT CTGGCTGGAG
ACGACCGGAC AGACGGAGGC CGAGGCACTC GGATTCGGCT GGGTCGATGT CATCCATCCC
GATGATCGGC AGGCAGTCCA GGAAATATTC TTCAAGGCGA CTGCCGGCAA GGGACCGACG
CGGAGTGAGT ACCGGCTGCG AAGGGCTGAC GGAAGTTGGG CCTGGGTCAT CGATGTCGGA
CAACCCCGCT TTTCGGCCGA CGGAACGTTC CTCGGCTATG TGGGATCCGT TCTCGACATC
ACGGATCGCC GAGCCGGGGA GATAGCGCAG CAGGAAGCTC AGGCGTTTAT CAGAAGCATT
TTCGACAGCA GTCCGGACTG CGTGCGCGTG CTCGACCTGG AGGGACGGCC CCTGCTCATG
AACGAGGCGG GCCGCCGCAT TTTCGGGCTG AACGAAGACG CGCCGATAAC GGGGCAGACA
TGGGACTCCA TCGGGCGGGC CTCGGACGCC CATAAGGTCG AGGCCGGTTG GGAAAGCGTC
CGACACGGCA AGACCGCTCG TTTCGAGATC ACAGTTCGGG ATGCCGGAGG TGAAGAAAGA
TGCATGGACG TGATCGCAGC CCCGATCACG GACAACCTGG GAAAGCCATC CAGAATCCTC
TCGATCTGGC GCGACATTAC CGACGCGAAG CTTGCAAGCG ACGAGATCAG CCGTGCCCAG
AAGCACGCCG AAGCGGCTGC CAGCCAGCTT TCCTCGGTCC TCGAGAGCAC GATGGACAGC
GTCATGCTGC TCGACGCGGA CTGGCGCGTC CGCTATCTCA ACGAGAACGC CAAGAAGCTC
CTGCAGATCG GGGACGAGGC CCTCGGCAAG AAATTCTGGA AGCTGTTTCC CGAAGAGGAA
ATGGGGAACT TCGCCAAACA TTGCAGGGAA GTGATGGAGC GACGTGTCCG CTCCTTTTTC
GAAGATCATT TGCCATCCCT CGGCCGGTGG ATTGAAGCAA ACGCCTCTCC AACGCAAGAC
GGTATTTCCA TCTTCTGCCG GGACATAACC GAGAGGCGGC GGGCGGAGGA GGACACGCTT
CTGGCCCAGA AGCAGTTGGC GCACATGGCA CGGCACGACA TGCTCACGGG CCTTCCAAAT
CGAATGTTCT TCCGCGAATG CTTCGAGCAG GCGCTGAATG AGAGCCGTCA TGCGCGCATG
GCAGTGCTTT GCCTGGACCT CGACGGCTTC AAGGCCATCA ACGACACGCT GGGCCATCCC
GCTGGCGACG TTTTGTTGCG GCAGGTTTCT CAAAGACTGA TTCAATCCGT CAGGACGACG
GAAACCGTCG CGCGTCTTGG GGGTGACGAA TTCGCGATCA TACAACCCCT GGCGAAATCA
CGTGACGAGG CCTTCCACCT CGCACAGCGG CTGATCGATA CCCTTTCCGA ACCCTTCAGC
ATCGAGGGCG CCGCAGCCAC CGTCGGAACC AGCATCGGTA TAGCCTTCGC GCCGGAAGAC
GGGACATCCG CAGATGAGTT GATCAAGGCG GCGGACATCG CACTCTACAG CGCCAAGTCG
AGCGGCCGTG GCACCTATAG ACTGTTCGAC GTGGCCATGC ACGCGCAGCT CCAAGCACAC
CAGCAGATGA AGGTCGCGAT GCGCGACGCC CTGGCGAATC GAGAGTTCGA GCTGCACTAT
CAGCCTCTGG TGAACCTCGA GTCGCGATGC GTGAGCTGCT GCGAGGCACT GTTGAGATGG
CGGCACCCAC AGCGAGGGAT GATCGCACCG TCGGAATTCA TTCCAATTGC AGAAGAAACC
GGCGCGATCG TGCTAATCGG AGAATGGCTT CTGGATGAGG CATGCCGTCA GGCCGCGCGG
TGGCCGGAAC GTGTGAGCGT CGCGGTGAAC CTCTCCCCTG TCCAGTTCAA GCACCGCAAT
CTCGTGGGAG CCGTCGCCAA TGCGCTGTCG TCCTCTCACC TTGATCCCGC TCGCTTGCAA
CTGGAGATCA CCGAAACGGT TCTCCTGGAT GAGAGCGAGC ATAATCTTGA GTTGCTCCAG
GACTTGCGCA GGCTCGGCGT GAAGATCGCG ATGGACGATT TTGGCACGGG CTATTCTTCA
CTGGGCTACC TGCGCAGCTT TCCGTTCGAC AAGATCAAGG TGGATCAGGC TTTCGTGCGG
GATCTGCCGC ACGGCAGGGA ATCGCTTGCG ATCGTCAAGG CAGTCGCCGG CCTTGGTCAG
AGCCTCGGCA TGACGACAAC GGTCGAGGGC GTCGAAACCG AGGATCAGTT GGCGATCGTG
AATTCGGAAG GGTTTGACGA GGTTCAGGGC TATCTCTTCT CCCGTCCCCT GCCCGCCGCG
GAAATTTCCA GGCTGATCGC CGACGGCGTG CTTTAG
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| Protein sequence | MNAPTPEGPS RRSYNLFQYL MDGVAEPVIV KDAGSRFVFI NEAACFLLDK DRNELLGRTD
HDLLPTEQAD KIVALDRVVL STGEGHEIEE QITTPDGTSR TLLTKKRPVS IPTGSTEEKF
VVVTIVDITE LRGIEETLRA SEEHYRSLVD LHPQVPWIAD RAGEVLEVGP RWSELTGLGE
KETLGKGWAK AVHPQDAGAL QDAWRRSLTN GTPLDWEYRL LTMTGEYRWF RARAAAKRDA
DEKIVRWYGL LEDVDERRRA ADALRESEAR FRAIADDAPV MIWVADPTGD TSFFNRLWLE
TTGQTEAEAL GFGWVDVIHP DDRQAVQEIF FKATAGKGPT RSEYRLRRAD GSWAWVIDVG
QPRFSADGTF LGYVGSVLDI TDRRAGEIAQ QEAQAFIRSI FDSSPDCVRV LDLEGRPLLM
NEAGRRIFGL NEDAPITGQT WDSIGRASDA HKVEAGWESV RHGKTARFEI TVRDAGGEER
CMDVIAAPIT DNLGKPSRIL SIWRDITDAK LASDEISRAQ KHAEAAASQL SSVLESTMDS
VMLLDADWRV RYLNENAKKL LQIGDEALGK KFWKLFPEEE MGNFAKHCRE VMERRVRSFF
EDHLPSLGRW IEANASPTQD GISIFCRDIT ERRRAEEDTL LAQKQLAHMA RHDMLTGLPN
RMFFRECFEQ ALNESRHARM AVLCLDLDGF KAINDTLGHP AGDVLLRQVS QRLIQSVRTT
ETVARLGGDE FAIIQPLAKS RDEAFHLAQR LIDTLSEPFS IEGAAATVGT SIGIAFAPED
GTSADELIKA ADIALYSAKS SGRGTYRLFD VAMHAQLQAH QQMKVAMRDA LANREFELHY
QPLVNLESRC VSCCEALLRW RHPQRGMIAP SEFIPIAEET GAIVLIGEWL LDEACRQAAR
WPERVSVAVN LSPVQFKHRN LVGAVANALS SSHLDPARLQ LEITETVLLD ESEHNLELLQ
DLRRLGVKIA MDDFGTGYSS LGYLRSFPFD KIKVDQAFVR DLPHGRESLA IVKAVAGLGQ
SLGMTTTVEG VETEDQLAIV NSEGFDEVQG YLFSRPLPAA EISRLIADGV L
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