| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5002 |
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| Symbol | |
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| ID | 5318651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 1518056 |
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| End bp | 1520416 |
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| Gene Length | 2361 bp |
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| Protein Length | 786 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640776784 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001313716 |
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| Protein GI | 150377120 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4092] Predicted glycosyltransferase involved in capsule biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000902541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCGGTATG AGCAACCCGC CCTGGTCCGG AACTCGGCTG CCGAGTCCCC GGTCCTTACC
GTACTGATAA CGATCAGGGT CGCAGCACAT TACGACATGA TCGAGCGGCT TCGCTTCAGG
TCGTTAGACA CTCGGATGCC CGACTCTGTG ACCTTCCTTG TAATTGACGA GGGCTCCAGC
TTTGAGGACG CAGAACGATT GAAGGCCGCA TGTGCCGAGA TCGGGTTCGA CTACGTTCGC
CACAACACCG AGAAGGACCT GTTCTGCCTC GCAGGCGCCC GAAACATCGG CGCTTCACTG
TCCCGTTCGC AATTCATCAT GTTCGAGGAT GTCGACCTTT TTCCTTATCC CGGTTTCTAT
CAGGACATTA TCGACGAGAT CCACGTTCAG GGGCTCGATA CGCACTCGAA CCGCTTCCTT
ACTGTCCCCT GCCTCTATCT GAGCGAACAA GCGACCGAGG CGGCCCTTGC TGGAACGCTA
TCGAAGAATG AAATTCTTCA CGACCACCTG ACTGGCGGGC CGCTTGTTGA TTTCGCCCTA
CCCGCCAGTT CGGCGCTCGT TATCAACCGC ATGTTTTATC TGTCGATCGG CGGCTCGAAC
GATCAGTTCA AGGGTTGGGG GCTGGAAGAT CTGGAACTCG CCTACCGGCT GACGCGTGGC
ACCAACAAGT TCATGTCTCC GAAGGACCAT CGTTGGCTCA TCGAAGGTGG ATACGCCCAC
AACCCAACTT ATCGAGGTTG GCGCGCACAG TTCCGCTTGC ATGGCGAGCT TCTCGCCCGC
AAATCGATCT ACATCTTTCA CGCCCACCAC CCGAGAGACA CGGCCTGGCG CAACCCGGAA
CTCCATCGGG CAAACAAAGC TATATTTCAG AGCAGCAATG AGTCCTTCGA CGCCAAGGGC
CACACATTGC CCTCTCTGCC GGATGCCAAG CGCGGCCGGT CGTTGATATT CGGGCGCGGC
ACCTTCGCCT ATAACCCCGC TCTCCTGCCT TTGTGGGGCG ATCTCGAGGT GAAGGGGTAT
CAAGACTTCC AGGAGCGGGA CATCATCGAG CATGTCCGCG CCAACGGCAT CAACCGGGTG
ATTTTCACAA ACCCCTACGC CAATGACATG CGGCTTTCCG TTTACAACCG AGTGCGATCG
GCGGGAATTC CCTTCTACGT CGTTGAGCGT GGCGCGCTTA CCGACTCCAT GTTCATTGAC
GATACCGGCT TTTGCTGTGA GAGCACGCGC TATCGCCGCG AGCACTGGCC TGCAGAACTT
GACGCCGGTC GTCTGCGGCG GGTGCAGGAT TACATTTCGG CCGAAACTTC CTCGGGCTCG
GCTCTTGAAA AACAGGGTGA GCGCATCGGC GCACGTGCCG CGCTTCAAAA ACTCGGCATC
CCGCCGCAAA AGAAGGTCCT GTTTGTTCCT TTCCAATCCC GCTCGGACAC GACCGTCAAT
CACTTCGCCG GCCCGATCGG ATCATTCGAT AACTTCGTTG ACCTCGTTCG GGACGTGACA
AAGAGGCTGC CACCCGATTG GGTGGTGGTC TTCAAAAAGC ATCCGCTTTC GTCAGTTCAA
GAGACCGTCC CCGGCGCCAT CGACGTCGGC AACATGCACA TCAAGGACCT GATGGAACTC
ACGGATTACG TTCTGCTTAT GAACTCCGGC GTAGGCGTCC TGTCTATCCT GTTCGACCGG
CCGTGCATCT ATACCGCCCA AGCCTTCTAT GCTGACGACG CTCTGAACCG TGGCGCATCC
AAGGCTGGCG ACGTCCTGCG CCTTCTTAAA GAGGGCTTCA CCGTCGACCA AGACAGCCGG
CTCCGGTTCT TGTCCTACTT ACTCGAAGAT TTCTACAGCT TCGGCAAATT CACGGTCACC
GAGAAGTCGT ACACGGACAA CGCTACTCTC TCGATAACAG AGAGGATTGA CTACTACCGC
GTAAACCTCC TTGGTGCGCG CGTCCTCGAC ACCGACGACC GCGAGCGGAT CCTCAACCCC
AATGCTCCCA TCTACGATCT TTTCCGTGAG TGGATACGGA GTAATAAGCA CACAGAGCGG
CAGGCTTCCC CATCTGGAGC CCCCCAAAGT GCGGATGAGG CCTCGCGCAA AGGACGGAGT
GCGTTTCACG CCAAGAGGTA TCAGGAGGCC GCCCTCATGT TTGACGCCGC CTGCTCGATA
CAGCCCAATA GAGCAACCCA TTACCGCGCA GCCGCCGAGG CGCTTTTCGC AATGGGGAAC
AGGAACATCG CCCTTTCACG TCTCGAAAAA GCGCGCCTCC TCGCCCCCGA CAACAAGTCA
ATCAAGCGCC GGATACGTGA GATGAAGAGG CCGCCCTTCC TTCAGTTCCT CTCGAAGCCC
TTCCCCATAG CAAAGGATTA G
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| Protein sequence | MRYEQPALVR NSAAESPVLT VLITIRVAAH YDMIERLRFR SLDTRMPDSV TFLVIDEGSS
FEDAERLKAA CAEIGFDYVR HNTEKDLFCL AGARNIGASL SRSQFIMFED VDLFPYPGFY
QDIIDEIHVQ GLDTHSNRFL TVPCLYLSEQ ATEAALAGTL SKNEILHDHL TGGPLVDFAL
PASSALVINR MFYLSIGGSN DQFKGWGLED LELAYRLTRG TNKFMSPKDH RWLIEGGYAH
NPTYRGWRAQ FRLHGELLAR KSIYIFHAHH PRDTAWRNPE LHRANKAIFQ SSNESFDAKG
HTLPSLPDAK RGRSLIFGRG TFAYNPALLP LWGDLEVKGY QDFQERDIIE HVRANGINRV
IFTNPYANDM RLSVYNRVRS AGIPFYVVER GALTDSMFID DTGFCCESTR YRREHWPAEL
DAGRLRRVQD YISAETSSGS ALEKQGERIG ARAALQKLGI PPQKKVLFVP FQSRSDTTVN
HFAGPIGSFD NFVDLVRDVT KRLPPDWVVV FKKHPLSSVQ ETVPGAIDVG NMHIKDLMEL
TDYVLLMNSG VGVLSILFDR PCIYTAQAFY ADDALNRGAS KAGDVLRLLK EGFTVDQDSR
LRFLSYLLED FYSFGKFTVT EKSYTDNATL SITERIDYYR VNLLGARVLD TDDRERILNP
NAPIYDLFRE WIRSNKHTER QASPSGAPQS ADEASRKGRS AFHAKRYQEA ALMFDAACSI
QPNRATHYRA AAEALFAMGN RNIALSRLEK ARLLAPDNKS IKRRIREMKR PPFLQFLSKP
FPIAKD
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