Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4996 |
Symbol | |
ID | 5318717 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 1510238 |
End bp | 1511569 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640776778 |
Product | capsule polysaccharide export protein-like protein |
Protein accession | YP_001313710 |
Protein GI | 150377114 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3524] Capsule polysaccharide export protein |
TIGRFAM ID | [TIGR01010] polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0773002 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGCAA GCAAAGACGC GGCTGTGAAC AAGGCTGATT CCGCGCAAGC CGCCGGGAAG GACGTGTCGG CAACGGCCGC GGCGAAAAGC AAGGGCATAG CGGTTCTCGA AGGGCTTCTC GGCAAGGAAA GCGCGCCGGT CATCCCCCTG CCGGGACGCC AAAAGGCCTT TCCCCCCAAG AAGACAGGCT GGAAAGCCGG CTGGCTCAAG AAGCTCCGCT GGCGTCACGC GATCATCGGC GGCACCTTCC TGGGTCTTGT TGCCGTTCCC GCGACGCTTG CTTCGCTCTA CATGGCCTTC ATCGCCGCCG ACCAGTATCA CAGCACCACG TCTTTTGCCG TGCGCAGCAT CGAGGGCGGC GTTTCAAGCG ACATCCTGGG AATGTTCACA CAGGCATCCG GCGGCAGCAC GGTTTCGGAT AGCTATATCC TCATGGATTA TATCCTGAGC GAGCGCATGG CGGCGGACGC GGACCGCCGG TTCAAGCTGG AAGACGTCTA CGCGACGCGC GGACTGGACT ATTTCTACGG TATCGGCTCC GAATTGCCGA TCGAGGATAA GCTCGACTAT TGGCGCGACA TGGTGAACGT CAATTTCGAC CACGCCTCCG GCATCATGCA GGTAACCGTC AAGGCCTTTG AACCGCGGCA GGCGCGTGAG ATCGCGAAAT TCATCGTGGA CCAGAGCGAC AACCTCGTGA ACAGCCTCTC GCTCTCCGCC CGCAACGACG TGCTGCGTGC GGCGCAGGAC GAAGTGCTTG CGGGCGAAGC GCGGCTTTCC AAAGCGCGCG CGGCACTGCG CGACTATCGC GACAAATCGC AGGAAATCAG TCCGGAAGAG GGGGCAAAGC TTGCCGTTCA GCTCATCGGA TCGCTGGAGC AGCAGCTGAC GCAGCTCAAT GCCGATCTTG CGACGGCCAA GAGCCAGATG GGCGAAGACA CGCCCCGAAT CCGTGTCCTC AAGACGCGCA TAGAGAGCCT GGAGCAGCAG CTCGACGTGG AGCGCCAACG CCTGGGCGCC GGCGAAAAGT CCGCGGCCGG AAACGACCCC AATTCACCGG ATGTCGCGGG TCGCATCGCC GAGTTCGAGG AATTGGAGAC GGAGCGCGAG TTCGCGGAAC GTGCCTATAC GGCAGCGTTG GGATCGCTGG AGAAGGCACG CATCGACGCA AACAACCGCC AGCGCTATCT GGCACTTTTC ATCGAGCCGA CGCTTTCGGA ACTTGCTCAG TATCCGGCGC GCCTGCTGAA CTCGTTTCTG GTGATGCTGG GACTACTATT TGCCTGGGGC ATCGGCGTGA TGGGATATTA TAACATCCGC GATCGGGCGT AG
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Protein sequence | MAASKDAAVN KADSAQAAGK DVSATAAAKS KGIAVLEGLL GKESAPVIPL PGRQKAFPPK KTGWKAGWLK KLRWRHAIIG GTFLGLVAVP ATLASLYMAF IAADQYHSTT SFAVRSIEGG VSSDILGMFT QASGGSTVSD SYILMDYILS ERMAADADRR FKLEDVYATR GLDYFYGIGS ELPIEDKLDY WRDMVNVNFD HASGIMQVTV KAFEPRQARE IAKFIVDQSD NLVNSLSLSA RNDVLRAAQD EVLAGEARLS KARAALRDYR DKSQEISPEE GAKLAVQLIG SLEQQLTQLN ADLATAKSQM GEDTPRIRVL KTRIESLEQQ LDVERQRLGA GEKSAAGNDP NSPDVAGRIA EFEELETERE FAERAYTAAL GSLEKARIDA NNRQRYLALF IEPTLSELAQ YPARLLNSFL VMLGLLFAWG IGVMGYYNIR DRA
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