| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4942 |
|---|
| Symbol | |
|---|
| ID | 5318269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 1453711 |
|---|
| End bp | 1454697 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640776725 |
|---|
| Product | UDP-glucose 4-epimerase |
|---|
| Protein accession | YP_001313657 |
|---|
| Protein GI | 150377061 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1087] UDP-glucose 4-epimerase |
|---|
| TIGRFAM ID | [TIGR01179] UDP-glucose-4-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0332152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.293116 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGAACA ACAACATCCT CGTCGTCGGC GGAGCCGGCT ATATAGGCTC GCATACCTGC
CTCCAGCTCG CGGCAAAGGG GTACCAACCG GTCGTTTACG ACAACCTCTC CAACGGTCAT
GAGGAATTCG TCAAATGGGG AGTTCTCGAA AAGGGCGATA TTCGCGACAG GCAGCGCCTT
GACGAAGTTC TTGCCCGGCA CAAGCCACGG GCGATCCTGC ATTTCGCGGC CATGATCGAG
GTGGGGGAGT CGGTCAAGGA TCCGGCCGCC TTCTACGACA ACAATGTCAT CGGCACCCTG
ACACTGCTTT CAGCGGCGCT GGCGGCGGGC ATCGATGCCT TCGTTTTCTC CTCCACCTGC
GCGACCTACG GTCTGCCCGA CAGCGTGCCG ATGAACGAGA CGCACAAGCA GGCGCCTATC
AATCCCTATG GCCGCACCAA ATGGATTTGC GAGCAGGCGC TGAAAGATTA TGATCATTAT
AAGGGGCTGC GCTCCGTAAT CCTGCGCTAT TTCAATGCTG CAGGCGCCGA TTTCGAGGGC
CGCATCGGCG AGTGGCATGA GCCCGAGACC CATGCGATCC CGCTGGCCAT CGATGCGGCA
CTCGGCCGCC GCGAGGGCTT CAAGGTCTTC GGAACCGACT ACGACACCCG CGACGGAACC
TGCGTACGCG ACTATATCCA CGTCCTCGAC CTGGCAGATG CCCATGTACG CGCCGTCGAC
TATCTGCTGG AGGGCGGCGA GAGCGTCGCG CTCAATCTCG GAACCGGCAC CGGTACAACG
GTGAAGGAAC TGTTGAACGC GATCGAAGAC GTGGCAGGCC GGTCGTTCAA TATCGGCTAT
GCGGAGCGCC GCGAAGGTGA TTCGACCACG CTGGTGGCGA ATAATGACAA GGCACGCGAG
GTCCTCGGCT GGGAGCCGCA ATACGATCTC GCAGCGATAA CCAGGTCTGC CTGGAACTGG
CATTCGCGCA GAAACCAGGG CGCCTGA
|
|---|
| Protein sequence | MQNNNILVVG GAGYIGSHTC LQLAAKGYQP VVYDNLSNGH EEFVKWGVLE KGDIRDRQRL
DEVLARHKPR AILHFAAMIE VGESVKDPAA FYDNNVIGTL TLLSAALAAG IDAFVFSSTC
ATYGLPDSVP MNETHKQAPI NPYGRTKWIC EQALKDYDHY KGLRSVILRY FNAAGADFEG
RIGEWHEPET HAIPLAIDAA LGRREGFKVF GTDYDTRDGT CVRDYIHVLD LADAHVRAVD
YLLEGGESVA LNLGTGTGTT VKELLNAIED VAGRSFNIGY AERREGDSTT LVANNDKARE
VLGWEPQYDL AAITRSAWNW HSRRNQGA
|
|---|
| |