| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4928 |
|---|
| Symbol | |
|---|
| ID | 5318244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 1437405 |
|---|
| End bp | 1438403 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640776711 |
|---|
| Product | monosaccharide-transporting ATPase |
|---|
| Protein accession | YP_001313643 |
|---|
| Protein GI | 150377047 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.611047 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.698391 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTA CGCTCGATCG GGCAGTCGGT CAGAGGGACC GGGGATGGCT CTCGTTCCTG
TTCGCAAGTC AGGCGTTCTG GGTTCTTATC GCCGTCATTC TCGCCTGTCT CTTCCTGTCT
GTCGCTACCG ACTCCTTCGC CACAGCCAAA AACCTCTATA ACATCACGCG GAATTTCACC
TTTGTCGCAA TCATCGCGCT TGGGATGACG CTGGTCATCA TCACCGGCGG CATCGATCTG
TCGGTGGGAT CGGTCCTTTG CCTGAGCAGT ATGGTGCTTG CCGTCGTCAT GCATGCCGGC
TACGGCATCG AGGTGGGAAT TGCCGCCTCG ATCGGCACGG CTTTGTTGGC CGGAGCCTTC
AATGGCGTCA TGATAGCCTA TCTCGGCTTT CCGCCGTTCG TGATCACGCT CGGCATGCTC
TCGATCGCAC GCAGCCTGGC GATGGTCGCA TCCAACAATA CGGTTGTCTT CGAGTTCGGA
CCGGACCACG ATGCGCTGCT CGCGCTGGGC GGCGGCGCAT GGTTCTTCGG CATCGCCAAT
CCGGTTCTCT ATATGATTGT CCTGGCGCTC GTGACCGGCT TCGTGCTGCG CTGGACGAAG
TTCGGCCGCT ATGTTTTCGC AATCGGTGGC AACGAGCATG CAGCAAGGCT CACCGGCGTT
CCGGTCAGGC GGATCAAGGT CATCGTATAC ATGATCTCTG CGTTGGCCGC CGGCATCGCC
GGCATCGTCC AGACCGGCTG GCTCGGGGCG GTGACCACCA ATATCGGCGC AGGAATGGAA
CTTCAGGTCA TCGCTGCTGC CGTGATCGGC GGGGCCAATC TGGCGGGTGG CGTCGGTACG
GCGTCCGGCG CCCTGATAGG AGCCGCGCTG ATCGAGGTGA TCCGCAATAG CCTCGGCCTG
CTTGGCATTA ACGCATTCTG GCAAGGCGCC TTCATCGGCG GCGCCATCGT TCTTGCAGTG
CTCTTCGACC GAATCCGAAA CTTCCGGCAA AGCGAATAG
|
|---|
| Protein sequence | MAITLDRAVG QRDRGWLSFL FASQAFWVLI AVILACLFLS VATDSFATAK NLYNITRNFT
FVAIIALGMT LVIITGGIDL SVGSVLCLSS MVLAVVMHAG YGIEVGIAAS IGTALLAGAF
NGVMIAYLGF PPFVITLGML SIARSLAMVA SNNTVVFEFG PDHDALLALG GGAWFFGIAN
PVLYMIVLAL VTGFVLRWTK FGRYVFAIGG NEHAARLTGV PVRRIKVIVY MISALAAGIA
GIVQTGWLGA VTTNIGAGME LQVIAAAVIG GANLAGGVGT ASGALIGAAL IEVIRNSLGL
LGINAFWQGA FIGGAIVLAV LFDRIRNFRQ SE
|
|---|
| |