| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4748 |
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| Symbol | |
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| ID | 5319147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 1269479 |
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| End bp | 1270456 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640776546 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001313478 |
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| Protein GI | 150376882 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00048921 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00325994 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAATCC TGGTAAAACT GGCGGCGGGT CTAGTAGTCG CCGCTGCATT CATGGGCAAT
GCAGCCAACG CCCAGACGGT GCTGCGCTCA TCCGACACGC ATCCGGACGG CTATCCGACG
GTCGAGGCGG TCGAGTACTT CGGTGAGCTG GTCAAGGAGC GTACGGCCGG CCGCTACTCC
GTCGAGGTCT ATCACTCCGC GCAACTCGGG GAGGAAAAGG ACACGATCGA GCAGGTGCGT
TCCGGCGTCA TCGAGCTGAA CCGCGTCTCG ATGGCCCCCT TCAACGGTAC GGTGAAGGAA
TCGATCGTTC CGGCGCTTCC CTACCTCTTC CGTTCGGAAG AGCACATGCA CAAGGTGATG
GACGGGGCGA TCGGCGACCA GATCAAGACG GCCTTCGAAA GCGCCGGAGT GGTGGTGCTC
GCCTTCTATG ACGCTGGCGC GCGTTCCTTC TACAACAAAC AGAAGCCGAT CAGTTCGGTT
GCCGACATGA AAGGCTTGAA GTTCCGCGTG ATCCAGTCCG ACATCTTCGT GGACATGGTG
GCCGCGCTCG GGGCGAACGC TACGCCCATG CCTTACGGTG AAGTCTATTC CGGAATCGAA
ACGGGCGTCA TCGACGGCGC GGAGAACAAT TTTCCAAGCT ACGACACCGC CAAGCATTTC
GAAGTTGCCA AGAACTATTC GCTCGACGAA CACACCATCC TTCCGGAGGT ATTCGTCATG
AACAAGGCCG TCTTCGATAA ACTCACGCCG GAAGATCAGG AGATATTCAA GCAGGCCGCA
AAGGACAGTG TCGCCAAACA GCGCGAGCTC TGGGCTGCCA AGGTCAAGGA GTCGCGTGGG
AAGGTCGAAG CGGCCGGCGC GCAGATCACC ACACCCGAAA AGCAGGGTTT CATCGATGCA
ATGAAGCCGG TCTACGAAAA GCACGTTACC GATGCCGTCC TGAAGAAAAT GGTTGAGGAC
GTGCGCGCGG TACAGTGA
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| Protein sequence | MKILVKLAAG LVVAAAFMGN AANAQTVLRS SDTHPDGYPT VEAVEYFGEL VKERTAGRYS
VEVYHSAQLG EEKDTIEQVR SGVIELNRVS MAPFNGTVKE SIVPALPYLF RSEEHMHKVM
DGAIGDQIKT AFESAGVVVL AFYDAGARSF YNKQKPISSV ADMKGLKFRV IQSDIFVDMV
AALGANATPM PYGEVYSGIE TGVIDGAENN FPSYDTAKHF EVAKNYSLDE HTILPEVFVM
NKAVFDKLTP EDQEIFKQAA KDSVAKQREL WAAKVKESRG KVEAAGAQIT TPEKQGFIDA
MKPVYEKHVT DAVLKKMVED VRAVQ
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