| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4743 |
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| Symbol | |
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| ID | 5319111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 1264964 |
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| End bp | 1265728 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640776541 |
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| Product | 2-deoxy-D-gluconate 3-dehydrogenase |
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| Protein accession | YP_001313473 |
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| Protein GI | 150376877 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00112688 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGCCTGC CGTCGAGCTT CAGCCTCGCC GGCCGGCGCA TCGTCGTCAC CGGAGCCAAT
ACCGGTATCG GACAGGGTAT CGCGGTTTCG GTCGCCCGGG CCGGCGGCAC GGTGATCGGC
GTGGGCCGCT CGGCGATGGA CGAGACCGAG AAGAAAGTCG CTGATGCGGG TGGGATCTTC
ATTCCAGCCC GTACCGATCT TGCGGATCGC AAAGCCGCCC GCCCCCTCAT CGACGGGCTG
TGGGACGCGC ACGGTCCGCT ACATGGCCTC GTCAACAATG CGGGTATCAT ACGTCGCGCC
GACGCGGTGG ATTTCACCGA GACCGACTGG GACGACGTGA TCGACATCAA TCTACGTTCG
CTGTTCTTCC TGTCTCAGGG TTTCGGGCGG CGGGTGATTG CCGAGAAAAG CCGGGGCAAG
ATCGTCAACA TCGCTTCACT GCTTTCCTTT CAGGGCGGCA TCCGCGTTGC ATCCTACACC
GCATCCAAAC ACGGAGCGCT CGGCATCACA CGATTGCTCG CCTGCGAATG GGCGGCCAAG
GGCGTCAATG TGAATGCCGT GGCCCCCGGC TACATCACCA CGAACAACAC GGAAGCGCTT
CGCGCCGACG AAAAGCGCAG CACCGCCATT CTGGAGCGCA TTCCTGCCGG ACGTTGGGGT
ACGCCCGATG ATATCGGCGA TGCGGCAGTG TTCCTGCTCG CACCCGCCTC TGACTATATG
CACGGAGCCG TCGTCCCGGT CGACGGCGGC TGGCTCGCCC GATAG
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| Protein sequence | MSLPSSFSLA GRRIVVTGAN TGIGQGIAVS VARAGGTVIG VGRSAMDETE KKVADAGGIF
IPARTDLADR KAARPLIDGL WDAHGPLHGL VNNAGIIRRA DAVDFTETDW DDVIDINLRS
LFFLSQGFGR RVIAEKSRGK IVNIASLLSF QGGIRVASYT ASKHGALGIT RLLACEWAAK
GVNVNAVAPG YITTNNTEAL RADEKRSTAI LERIPAGRWG TPDDIGDAAV FLLAPASDYM
HGAVVPVDGG WLAR
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