| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4740 |
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| Symbol | |
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| ID | 5319108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 1262311 |
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| End bp | 1263294 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640776538 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_001313470 |
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| Protein GI | 150376874 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00130889 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACAGGA TTTCACGCCG CGCGTTCATG CTTGCCGCGA CCGCGGCTGG CGCAATCGCC
GTCGCCGGGA CTGTCGCATT CGCGGAACTG CCGAAGCTCG CGCAGAAGGA GACCTACAAG
GTCGGCTTCG CGCAAACGGA ATCCAACAAC CCCTGGCGCA TCGCACAGAC CAACAGCATG
AAGGCCGAGG CCGAGAAGCT CGGGCATCAG CTGGTCTATA CCGATGCTGC CGGATCCGCT
GCCAAGCAGG TGGCCGACGT CAACTCGATG ATCGCCCAGG GGGTCGACCT GATCTTCCTC
GCACCGCGGG AAGAAAAACC GCTCATCCCC GCCGTCATGG CCGCCAAGAA GGCCGGCATC
CCCGTCATCC TGCTCGACCG AAGTGTTGAT CCGTCGCTTG CCAAGGCGGG CGAGGACTAC
GTCACCTTCA TCGGCTCGGA TTTCATAGAG GAAGGCAAGC GCATCGCCGA GTGGCTGATC
AAGAACGCCA ACGGCAAGTC GAAGATCATC GAGCTCGAAG GGACCACCGG TTCGTCTCCG
GCCAACGACC GCAAGAAAGG CTTCGACGAG ACGATCAAAA CGGCAGGCGG CTTTGAGATC
GTCGCATCGC AGTCGGGCGA TTTCGCCCGG GACAAGGGCC GGCAGGTTGC CGAAGCCCTG
TTGCAGGCGC ACCCGGATGC CGACATCGTT TACGCGCATA ACGACGAAAT GGCGATCGGC
GCCATCGCTG CCATCGAGGC GGCCGGCAAG GTCCCAGGCA AGGATGTGCT GGTATTGTCG
ATCGACGGCG GCAAGGAAGC GGTTCAGGCG GTCATCGACG GCAAGATCGC AGCAGTCGTC
GAATGCAATC CGCGCTTCGG ACCCAAGGCC TTCGAAACGA TGCTGCGTTA CGCCAAGGGC
GAGAAGATCG ACCCGCTGGT CATAAACGAG GACAAGTTCT ACGACTCGAC CAACGCGGCT
GCCGAACTCG CCAACGCGTA CTGA
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| Protein sequence | MNRISRRAFM LAATAAGAIA VAGTVAFAEL PKLAQKETYK VGFAQTESNN PWRIAQTNSM
KAEAEKLGHQ LVYTDAAGSA AKQVADVNSM IAQGVDLIFL APREEKPLIP AVMAAKKAGI
PVILLDRSVD PSLAKAGEDY VTFIGSDFIE EGKRIAEWLI KNANGKSKII ELEGTTGSSP
ANDRKKGFDE TIKTAGGFEI VASQSGDFAR DKGRQVAEAL LQAHPDADIV YAHNDEMAIG
AIAAIEAAGK VPGKDVLVLS IDGGKEAVQA VIDGKIAAVV ECNPRFGPKA FETMLRYAKG
EKIDPLVINE DKFYDSTNAA AELANAY
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