| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4628 |
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| Symbol | |
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| ID | 5319263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 1130756 |
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| End bp | 1132810 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640776427 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_001313359 |
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| Protein GI | 150376763 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.170087 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCTATTG CCCTCGCTGT ATCCGCTCTC GCAGCCATCG CCCTCTTATG GGCCGACAGG
GCCTTTCCCC CGCCCCTCTC CGAGGCTGCA ACGGTCTCGG CCGAAGTCCT CGACAGAGAC
GGCCATCTCC TGCGCGCCTT TGCAACGGAA GGTGGCTTAT GGCGGCTGAA GACAACCGTG
GAGGACGTCG ACCCGCGCTT CATCGAGATG CTGATCGCCT ATGAGGACCA ACGCTTTCGC
GAACATCGCG GCGTCGACCC ACTGGCGCTT GGACGGGCGG CGCTGCAATT CCTCACCAAT
GGCCGCATCG TTTCGGGTGC CTCGACGCTT TCCATGCAGG TTGCAAGGCT TATAGAGCCC
CGCGAGCGGC GGACGCTGGC AGCGAAGTTC CTGCAGGTCG CGCGTGCCAT TCAGATTGAA
CGGCGTCTCG ACAAGGACGA GATCCTCGAC CTCTATCTGA CCCGTGCGCC CTATGGCGGC
AACCTCGAGG GCGTACGTGC GGCAAGCCTC GCCTGGTTCG GCAAGGAGCC GCGCCGTCTT
TCGGCGGGCG AGGCGGCACT GATGGTGGCG CTGCCGCAAT TGCCGGAAAA GCGGCGGCCC
GACCGCAATC TGGCGGCCGC CGAGGCGGCC CGCAAACGTG TGCTCGCCCG CGCTGCAGTC
GCCAAAGTCA TTGGCGATGG AGAAGCGGAG CGAGCGGCGA TGACCGCCAT ACCGACACGC
CGACTTCAGC TTCCAGTCCA TGCTGCCCAT CTGGCGGAGG CGGCACGTCG GAAGGATCCG
GCGGCCCTGG AGCATCCGAC GACGCTCAGC CGTAATGTTC AGCGGGGGCT CGAAACGGTC
GCGAGAGAGA GTGCCGTAAA GCTCGGCTCA AAGGTGTCGA TCGCCATGGT CATGGCCGAC
ATCAGGACGG GCGAAATCGT CGGAGAGGTC GGCTCGGCAA ACTATTTCGA CGCAAGCCGG
TCCGGCTGGA TCGACATGAC GCGGATCACC CGCTCCCCGG GATCGACGTT GAAACCCTTC
ATCTACGGCC TTGCGTTCGA AGAGGGGCTC GTCAGTCAGG AGACGATCGT CGAAGACCGG
CCGGCGGACT TCTTCGGCTA CCGCCCACGC AATTTCGACA TGAGCTACCA GGGCGATGTC
AGCGTGCGGC AGGCGCTGCA ACTTTCCCTG AATGTGCCGG CGATCCGCCT GCTCGACGCC
GTGGGACCAT CGCGACTGAT GGTCCGCTTC CGCCGTGCCG ACATCCGGCC GAGACTGCCG
CCACATGAAG CACCGGGCCT TGCGATCGGG CTAGGCGGAG TGGGCATCAC GCTTCGCGAG
TTGGTGCAGC TCTATGCGGG CCTGGCAAAC CACGGCATAC CGGTGCGCCT GGGCAACGGC
GTCGAAGGCG TTCCTGGTCC CATCGACGGC GAACCGCTCC TGTCAACAGT GGCGGCCTGG
CATGTCGCGG ACATTCTCTC CGACGTGCTG CCGCCCGCGG GAAGCCGTCG GCGCGGTATC
GCCTACAAGA CCGGCACCAG CTACGGCTAT CGCGACGCCT GGTCCGTAGG GTTCGACGGC
CGCTATGTGC TTGGTGTCTG GGCCGGCAGG CCCGACAATG GCGCGGTGCC CGGTCTCACC
GGTTACGGTG CGGCCGCCCC AATCCTTTTC GAGGGTTTTG TCAAGGCCGG GATTGGGACG
ACGCCGCTGC CCGGCCCGCC GGCGGGTGCT GTCCGGCTTG CCCAGGCCGA TCTGCCGGTC
AGCCAGCGGC GGTTCTCCAT CAATGCGAAC GGTCTGCTTG CAGCCTCGGC TCGGGAGCCG
GCTCCACAGA TCGTGTTCCC GCCCGAGGGT GCTCACGTAG AGCTCAGCGT AAGGGGCCAG
GCAGCGATGT CCCCCTTGAC GCTAAAGCTC CAGGGCGGTC GGGCCCCCTT CCGCTGGCTG
GCCAATGGTC GTCCGCTACC CGAGGCAACG CGCCGGCGGG TCAGCCGCTG GCTGCCGGAT
GGCGGCGGCT ACTCGACACT CACCGTTATC GACGCGCTCG GTCGGGCCGC CAGTGTTCGC
GTCTTCGTCC AGTGA
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| Protein sequence | MPIALAVSAL AAIALLWADR AFPPPLSEAA TVSAEVLDRD GHLLRAFATE GGLWRLKTTV
EDVDPRFIEM LIAYEDQRFR EHRGVDPLAL GRAALQFLTN GRIVSGASTL SMQVARLIEP
RERRTLAAKF LQVARAIQIE RRLDKDEILD LYLTRAPYGG NLEGVRAASL AWFGKEPRRL
SAGEAALMVA LPQLPEKRRP DRNLAAAEAA RKRVLARAAV AKVIGDGEAE RAAMTAIPTR
RLQLPVHAAH LAEAARRKDP AALEHPTTLS RNVQRGLETV ARESAVKLGS KVSIAMVMAD
IRTGEIVGEV GSANYFDASR SGWIDMTRIT RSPGSTLKPF IYGLAFEEGL VSQETIVEDR
PADFFGYRPR NFDMSYQGDV SVRQALQLSL NVPAIRLLDA VGPSRLMVRF RRADIRPRLP
PHEAPGLAIG LGGVGITLRE LVQLYAGLAN HGIPVRLGNG VEGVPGPIDG EPLLSTVAAW
HVADILSDVL PPAGSRRRGI AYKTGTSYGY RDAWSVGFDG RYVLGVWAGR PDNGAVPGLT
GYGAAAPILF EGFVKAGIGT TPLPGPPAGA VRLAQADLPV SQRRFSINAN GLLAASAREP
APQIVFPPEG AHVELSVRGQ AAMSPLTLKL QGGRAPFRWL ANGRPLPEAT RRRVSRWLPD
GGGYSTLTVI DALGRAASVR VFVQ
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