| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4595 |
|---|
| Symbol | |
|---|
| ID | 5318505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 1094344 |
|---|
| End bp | 1095519 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640776396 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001313328 |
|---|
| Protein GI | 150376732 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.579671 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGTCAC CGATCCCGGC GCCCGGCGAG CCCCTTCCGC ATTACGTTTC GACTGCGCCC
TTCGATCCCT ATTCCGTCGA GGTGATGACC GAAGAGCAGG TGCGGGTAAA TCAGGCATCG
CAGTTGCGCC TGATGTGGTG GAAATTCAAG CGCCACAAGA TTGCGCTCGC TTCCGGCATT
TTCCTGGCAG CGCTTTATGG AATGATCCTG ATCTGCGAGT TCCTGGCGCC CTACGATCTG
CACACACGCA ATGTCGACTT CATCTATGCG CCGCCGCAGA GCGTCCACTT CTTTCACGAG
GGCGAATTCG TCGGCCCCTT CGTCTACGGG CGGACGATGA AGCTGGACAT GGATACGCTG
AAGCGCAACT ACACCGACGA TATGTCGGAT GTCGAGCCGA TCCGGTTCTT CTGCCGCGGT
GACGGCTATC GATTCTGGGG GCTGTTCGAA AGCAATCTGC ATCTGGTCTG CCCGGCCGAA
GGAGGGCAGC TTTTCCTTCT GGGTACGGAC CGGCTTGGCC GCGACGTGCT GTCCCGCATT
ATCTACGGCG CGCGGATCTC GTTGACGATC GGGCTTCTCG GCATCACCGT CAGCTTCGTT
CTCGGTATTG TGATCGGCGG GCTTGCCGGA TATCACGGCG GCGTCTTCGA CCTCCTGGTT
CAAAGATTGA TCGAGGTCCT CCAGTCGATC CCCAGCATCC CGCTCTGGCT TTCGCTGGCG
GCCATCATGC CGGCGACCTG GAGCCCGCTC CTCATTTATC TGGGCATAAC CGTCATCCTC
GGCCTTCTCG ACTGGACCGG CCTTGCACGC GCCGTGCGCT CGAAGCTGCT TGCGCTCAGG
GAGGAGGATT ACGTCCTTGC CGCGCAATTG ATGGGCGCGA AAAGCGGCCG CATCATCGGG
CGCCATCTCG TTCCGGGCTT CATGTCCCAT CTCATCGCGA CTGCAACGAT CTCGATACCC
GGAATGATCC TCGGCGAAAC GGCACTGAGC TTCCTTGGAC TCGGCCTGCG TCCTCCGATA
ACCAGCTGGG GCATTCTGCT CACGGAAGCA AAGAGCGTCA GCGTCATCGC CTTTTATCCG
TGGCTGCTTT TCCCCACCAT CCCGGTCATT CTTGTGATAT TGGCGTTCAA CTTCCTGGGA
GACGGGTTGC GTGACGCCGC CGATCCCTAC AAATAA
|
|---|
| Protein sequence | MTSPIPAPGE PLPHYVSTAP FDPYSVEVMT EEQVRVNQAS QLRLMWWKFK RHKIALASGI
FLAALYGMIL ICEFLAPYDL HTRNVDFIYA PPQSVHFFHE GEFVGPFVYG RTMKLDMDTL
KRNYTDDMSD VEPIRFFCRG DGYRFWGLFE SNLHLVCPAE GGQLFLLGTD RLGRDVLSRI
IYGARISLTI GLLGITVSFV LGIVIGGLAG YHGGVFDLLV QRLIEVLQSI PSIPLWLSLA
AIMPATWSPL LIYLGITVIL GLLDWTGLAR AVRSKLLALR EEDYVLAAQL MGAKSGRIIG
RHLVPGFMSH LIATATISIP GMILGETALS FLGLGLRPPI TSWGILLTEA KSVSVIAFYP
WLLFPTIPVI LVILAFNFLG DGLRDAADPY K
|
|---|
| |