Gene Smed_4560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4560 
Symbol 
ID5318422 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1047056 
End bp1048957 
Gene Length1902 bp 
Protein Length633 aa 
Translation table11 
GC content59% 
IMG OID640776361 
Productbifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein 
Protein accessionYP_001313293 
Protein GI150376697 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0529] Adenylylsulfate kinase and related kinases
[COG2895] GTPases - Sulfate adenylate transferase subunit 1 
TIGRFAM ID[TIGR00455] adenylylsulfate kinase (apsK)
[TIGR00231] small GTP-binding protein domain
[TIGR02034] sulfate adenylyltransferase, large subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATATG TTCAATCCAT ACCGCCGCAT GACATTGAAG CGCATCTGGT TGAGCACGAC 
AACAAGTCGA TCCTGCGATT CATCACATGC GGTTCGGTCG ACGATGGCAA ATCCACTTTG
ATCGGCCGGC TGCTCTACGA TGCGAAACTG ATCTTCGAGG ACCAGCTCGC AAACCTCGGA
CGTGTCGGCT CTCCCGGTGC TGCCAATGGC AAGGAAATCG ATCTCGCTTT GCTTCTCGAC
GGGCTCGAGG CCGAGCGCGA ACAGGGGATC ACCATCGACG TCGCCTACCG CTATTTCGCG
ACGTCGAAGC GCAAGTTTAT CGTTGCCGAC ACGCCCGGTC ACGAAGAATA TACGCGCAAC
ATGGTGACCG GCGCTTCGAC GGCGGATCTT GCCATCATCC TTATCGACAG CCGGCAGGGC
ATTCTTCAGC AGACGCGGCG GCATTCCTAT ATCGCCTCGC TTCTGGGCAT TCGCCATGTC
GTGCTGGCAG TCAACAAGAT CGATCTCGTA GACTTTCGAC AGCAGGTCTA TGACGAAATC
GTCGCCGACT ACATGGCTTT TGCGAAAGAG CTCGGTTTTG CCAGCATTCG GCCGATACCG
ATCTCAGCAC GAGACGGCGA CAACGTCATT TCGGCTTCAC CCAATACACC TTGGTACAGA
GGGGCGGCGC TGCTCGAATA TCTGGAAACG GTAGAGCTCG AGCCCATGGA CCAGGCCAAG
CCTTTCCGTT TCCCGGTTCA GATGGTGATG CGGCCAAATG CTGATTTCCG CGGCTATGCG
GGTCAGATCT CCTGCGGCAG AATTTCCGTC GGCGATCCGG TCGTCGTCGC AAAAACCGGA
CAGCGGACCT CGGTCAAGGC GATCGTGACC TATGACGGGG ACCTTGCGAC GGCAGGCGAG
GGCGAGGCCG TAACGCTCGT CCTTTCCGAC GAGGTGGATG CTTCGCGCGG CAATATGCTC
GTCGCCCCCG GCGCCCGGCC GTTCGTGGCG GATCAGTTCC AGGCGCATGT GATCTGGTTC
GATGCGAGCC CGATGATGCC CGGACGAAGC TATATATTGA GAACGGAGAC GGACAGCGTC
AGTGCGACGG TCACCGCGCT CAAGCATCAG GTCAACATCA ACAGCTTCGT GCGCGAGGCC
GCGAAATCGC TGCAGATGAA TGAAGTCGGC GTCTGCAACA TCTCGACGCA AACGCCGATC
GCTTTCGACG CCTATACGGA CAATCGAGCC ACAGGCAATT TCATCATCGT CGACCGGGTC
ACGAATGCGA CCGTCGGCGC GGGGCTGATC GACTTTCCAC TCCGGCGTGC CGATAACGTC
CACTGGCATG CGCTCGAGGT GAACAAGGTC GCGCGCAGCG CCATGAAGAA CCAGCTTCCT
GCCGTTCTCT GGTTCACCGG GCTTTCGGGC TCCGGTAAAT CGACCATTGC GAACGAGCTG
GACAGGATTC TCCACGCTCA GGGCAAGCAT ACCTATCTGC TCGACGGCGA CAATGTGCGT
CACGGCCTCA ACCGGGACCT CGGCTTCACC GAAGAGGACC GGGTGGAGAA CATCCGTCGC
GTGGCGGAGG TGGCGAAGCT CATGGCGGAT GCCGGTCTCA TCGTCCTCGT CTCCTTCATC
TCACCGTTCC GGGACGAGCG GCGAATGGCG CGGGAATTGA TGGATGATGG CGAGTTCATC
GAGATCTTCG TGGACACTCC GATCGAAGAG TGCGCGCGCC GGGACCCGAA GGGGCTCTAT
GAGAAAGCTC TCGCAGGCAA GATCGCAAAC TTCACCGGCG TATCCTCGCC TTATGAGACC
CCGGAAAACC CGGAGCTTCA TATCCGCACC GTCGGCCATG AACCGACCGA CCTGGCGCTC
GCGATTGAGG AATTCCTCGA CCGCAGGATG GAGGGCAAAT GA
 
Protein sequence
MSYVQSIPPH DIEAHLVEHD NKSILRFITC GSVDDGKSTL IGRLLYDAKL IFEDQLANLG 
RVGSPGAANG KEIDLALLLD GLEAEREQGI TIDVAYRYFA TSKRKFIVAD TPGHEEYTRN
MVTGASTADL AIILIDSRQG ILQQTRRHSY IASLLGIRHV VLAVNKIDLV DFRQQVYDEI
VADYMAFAKE LGFASIRPIP ISARDGDNVI SASPNTPWYR GAALLEYLET VELEPMDQAK
PFRFPVQMVM RPNADFRGYA GQISCGRISV GDPVVVAKTG QRTSVKAIVT YDGDLATAGE
GEAVTLVLSD EVDASRGNML VAPGARPFVA DQFQAHVIWF DASPMMPGRS YILRTETDSV
SATVTALKHQ VNINSFVREA AKSLQMNEVG VCNISTQTPI AFDAYTDNRA TGNFIIVDRV
TNATVGAGLI DFPLRRADNV HWHALEVNKV ARSAMKNQLP AVLWFTGLSG SGKSTIANEL
DRILHAQGKH TYLLDGDNVR HGLNRDLGFT EEDRVENIRR VAEVAKLMAD AGLIVLVSFI
SPFRDERRMA RELMDDGEFI EIFVDTPIEE CARRDPKGLY EKALAGKIAN FTGVSSPYET
PENPELHIRT VGHEPTDLAL AIEEFLDRRM EGK