Gene Smed_4499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4499 
Symbol 
ID5317939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp984136 
End bp985626 
Gene Length1491 bp 
Protein Length496 aa 
Translation table11 
GC content65% 
IMG OID640776300 
Productxanthine dehydrogenase small subunit 
Protein accessionYP_001313232 
Protein GI150376636 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG4630] Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A 
TIGRFAM ID[TIGR02963] xanthine dehydrogenase, small subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.999061 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0980927 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACAGG CACCCGACAG CATCCGCTTC ATCCTGAACG ACACAGAGAT CGCCCTTTCC 
GATGTTGCCC CGACAGCGAC ACTGCTGGAT TATCTGAGGC TGGAGCGCCG CCTCACCGGC
ACCAAGGAAG GCTGTGCCGA GGGCGACTGC GGCGCCTGTA CGGTGCTCGT CGGCCGGCTT
GCCCATGATG GCGAAGGAGG CGAGACTACC CTCGTCTATG AGAGCGTAAA CGCCTGTATT
CGTTTCATGG GCTCACTCAA CGCCACACAT ATCGTCACGG TCGAGCACCT GGCCGGCAAG
GACGGGAAGC TCCATCCCGT GCAGCAGGCA CTCGTGGATT TTCACGGCTC CCAATGCGGC
TTCTGCACGC CTGGAATCGT CATGTCGCTG TACGGGCTGT GGCTGACCAA CGACAGACCG
GGCCGCGCGG CAATCGAAAA GGCACTGCAG GGCAATCTCT GTCGATGCAC CGGCTACGAA
CCGATCGTGC GCGCGGCGGA GGCCGCGGCG GCGGATCGCC CGGACGTTCT CTTCGACCCG
ATCACCCGCG TGCGGGAGGC GGTAAGGGCA CGCCTGCAGG AGCTGAGACA AGCCGAAAGG
ATCGAAATCC GCAGCGGCGT GGACTGTCTG ATTGTACCCG CCGACGCTGC CGACCTCGCA
CGTGTCCTCG CCGATCGTCC CGCGGCCACG ATCGTCGCCG GCTGCACCGA TGTCGGACTT
TGGGTGACGA AGCAGATGCG ACCGCTGAAT ACGGTCGTCT TCGTTAACGG CATCGCCGAG
CTGCAGCGGA TCGAGAGCTC AAAAGCGGGT CTGACGATCG GAGCAGGCGT CAGCTACTCG
GCGGCATACG AGGCCCTTTC CTCCGCCTAC CCGTCGTTCG GCCGGCTTCT CGATCGCGTC
GGTGGCGATC AGGTGCGCAA CATGGGCACG ATAGGAGGCA ACATCGCCAA CGGCTCGCCG
ATCGGGGACA GCCCGCCGCC GCTGATCGTG CTCGGTGCGA CGCTTACCCT GCGCTCCCAT
GGCGGTTCGC GCACGCTCCC GCTCGAGGAT TTCTTCATCG CCTATGGCAA GCAGGATCGC
AGGCCGGGGG AATTCGTCGA AAGCATCTTC GTCCCGGCGC TGCCCGCGGG GGAGCGCTTC
GCCGCCTATA AGATCTCGAA GCGCCGCGAC GAGGACATTT CCGCGCTGCT TGGCGCCTTC
CGCATCTCGC TCGACGGAGA TCGGGTGAAG GCGGCGAGAA TCGCTTTCGG CGGCATGGCG
GCAACACCGA AACGGGCAAA GGTCGTCGAA GCGGCCCTGC TCGGCGAATT ATGGAATGAG
GGGACGATAC GCGACGCCCA GAGCGCCTTC GATACCGATT ACCAGCCGAT CACCGACTGG
CGCGCCACCG GCGCCTATCG CCTGCTTGCG GCGAAGAATC TGCTGATGCG CTTCTTCCTC
GAGAGCACCG GGGAGACGGC GCAGCTCCGG CGGTTCGAGG AGGTGGCATG A
 
Protein sequence
MEQAPDSIRF ILNDTEIALS DVAPTATLLD YLRLERRLTG TKEGCAEGDC GACTVLVGRL 
AHDGEGGETT LVYESVNACI RFMGSLNATH IVTVEHLAGK DGKLHPVQQA LVDFHGSQCG
FCTPGIVMSL YGLWLTNDRP GRAAIEKALQ GNLCRCTGYE PIVRAAEAAA ADRPDVLFDP
ITRVREAVRA RLQELRQAER IEIRSGVDCL IVPADAADLA RVLADRPAAT IVAGCTDVGL
WVTKQMRPLN TVVFVNGIAE LQRIESSKAG LTIGAGVSYS AAYEALSSAY PSFGRLLDRV
GGDQVRNMGT IGGNIANGSP IGDSPPPLIV LGATLTLRSH GGSRTLPLED FFIAYGKQDR
RPGEFVESIF VPALPAGERF AAYKISKRRD EDISALLGAF RISLDGDRVK AARIAFGGMA
ATPKRAKVVE AALLGELWNE GTIRDAQSAF DTDYQPITDW RATGAYRLLA AKNLLMRFFL
ESTGETAQLR RFEEVA