| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4390 |
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| Symbol | |
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| ID | 5318360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 884516 |
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| End bp | 886264 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640776194 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_001313127 |
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| Protein GI | 150376531 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.500904 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTACAT CCAACGGCAG GAATGCCGAC CCAGCCTCTG CCTTGCGGGA TTGCCGAACG
GCTTTCATCG GTGTTGCCAT CGCAAGCGCG CTCGTCAACG TTCTATACCT CACCGGGTCG
TTCTTCATGC TCGAAGTCTA CGATCGAATT CTGCCGAGCC GCAGCATTCC GTCCCTGGTT
GCTCTCTCTC TTCTCGCGCT GCTGCTTTAT GCCTTTCAGG GAGCCTTTGA GCTCGTTCGC
GGGCGGATGC TGGTGCGCAT CGCCGGTGCC CTCGACGAGA GCCTGAACGG TCGCATTTAC
CGCGCCATCG TGAAGGCGCC GCTGAAGCTC AGAATGCAGG GGGACGGTCT CCAGGCGCTG
CGCGATTTCG ATCAGGTTCG GTCGTTCCTG TCGGGTGCCG GCCCGGCCGC GCTCTTCGAC
CTGCCCTGGC TGCCCTTCTA CATCGCGATC TGCTTTCTTT TCCACCCGGT CATCGGTTTG
GTCGCGATCA TCGGCGGCCT GGTCCTGATG TTGCTCACCT ATCTCACCAA CCGCGGCACC
CAGGCGCCTG CCAGGAAAGC CTCGGAGGCC GGAGGGCTTC GCAACGCCTT CGCGCAGGCC
TCCCAGCGCA ATGCCGAGGT GGTTCATGCC ATGGGAATGT CAGCGCGGCT GACGGCGATG
TGGGAGAGGC GCAATACGGA GTTCCGCGAT GAGAACCGCC GCACCTCCGA TATCGGCAAT
GGCTACGGCG CGTTGTCGAA GGTCTTTCGC ATGGCGCTGC AGTCCTGCGT TCTGGCGGCC
GGCGCCGTTC TGGTGATACG AGGCGAAGCT TCGCCCGGGA TCATCATTGC GGGCTCGATC
CTGACAGCCC GGGCTCTTGC GCCCGTGGAA CTTGCCATCG GCAACTGGCG CGGCCTCGTC
GCAGCGCGCC AGAGCTGGCA ACGCCTCAAG GAATTGCTCA AAGCCCTGCC GGAAGCCGAT
GCACCACTCC AGCTTCCGAC CCCGCGCGAT CGCCTCACCG TCGAAGGGCT GGCAAGCGGT
CCGCCGGCGG CGCAGCGCCT CATCTTGTCG GATGTGAATT TCACGGTCGG TGCGGGCGGT
GCCGTGGGAG TCATAGGACC GAGCGCTTCG GGAAAATCGT CTCTGGCGCG CGCGATCCTC
GGTATATGGC CGGCCTATCG CGGCTCGGTT CGGCTGGACG GTGCAGCCCT CGATCAATGG
GACAGCGATG AACTCGGGAA ACACATCGGC TACCTGCCGC AGGACGTGGA ACTGTTCGCC
GGGACGATCG CGCAGAACAT CTGCCGTTTT GCCGAAGACG CGACACCGGA CGCGATCGTC
GCCGCCGCAA AGGCGGCGCG CGTCAACGAT CTGATCCTCC GGCTTCCGAA CGGCTATGAC
ACCGAGATCG GCGATGGCGG CATGACGCTC TCGGCCGGCC AGCGCCAACG GGTGGCTCTC
GCGAGGGCCC TTTACGGCAA TCCCTTTCTC GTCGTTCTCG ACGAGCCCAA TTCCAACCTC
GACGCCGAGG GCGAGCAGGC GCTCAGCGAA GCGATCATGA GCGTGCGCAG CCGTGGCGGC
ATCGTCATCG TGGTCGCCCA CCGGCCGAGC GCACTCGCAA GCGTCGATCT CGTGCTGATG
ATGAATGAAG GACGCATGCA GGCTTTCGGG CCCAAGGAGC AAGTCCTCGG TCAGGTACTT
CGTCCGCAAC AGGTGGAGCG ACAGAATTCG CTGAAAATCG TTGCAGAAGG GCAGGAGGCG
AAGCAATGA
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| Protein sequence | MATSNGRNAD PASALRDCRT AFIGVAIASA LVNVLYLTGS FFMLEVYDRI LPSRSIPSLV
ALSLLALLLY AFQGAFELVR GRMLVRIAGA LDESLNGRIY RAIVKAPLKL RMQGDGLQAL
RDFDQVRSFL SGAGPAALFD LPWLPFYIAI CFLFHPVIGL VAIIGGLVLM LLTYLTNRGT
QAPARKASEA GGLRNAFAQA SQRNAEVVHA MGMSARLTAM WERRNTEFRD ENRRTSDIGN
GYGALSKVFR MALQSCVLAA GAVLVIRGEA SPGIIIAGSI LTARALAPVE LAIGNWRGLV
AARQSWQRLK ELLKALPEAD APLQLPTPRD RLTVEGLASG PPAAQRLILS DVNFTVGAGG
AVGVIGPSAS GKSSLARAIL GIWPAYRGSV RLDGAALDQW DSDELGKHIG YLPQDVELFA
GTIAQNICRF AEDATPDAIV AAAKAARVND LILRLPNGYD TEIGDGGMTL SAGQRQRVAL
ARALYGNPFL VVLDEPNSNL DAEGEQALSE AIMSVRSRGG IVIVVAHRPS ALASVDLVLM
MNEGRMQAFG PKEQVLGQVL RPQQVERQNS LKIVAEGQEA KQ
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