Gene Smed_4268 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4268 
Symbol 
ID5319019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp757423 
End bp758352 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content60% 
IMG OID640776073 
Productperiplasmic binding protein/LacI transcriptional regulator 
Protein accessionYP_001313006 
Protein GI150376410 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAT TTTTCGCGGG CACCGCCTTG GCCGTGCTGA TGTCGACGGC AGCGCATGCA 
GAGACAATCG GGGTGTCGAT GGCGCTCTTC GATGACAACT TTCTGACCGT GCTGCGCAGC
GGCATGCAGG ACTATGCCAA AACCCTTGAC GGCGTCGAGC TGCAGGTCGA AGACGCTCAG
AACGACGTCT CCAAGCAGCA GAGTCAGATC CAGAATTTCA TTGCCGCCGG TGTCGACGCC
ATCATCGTCA ATCCGGTCGA CACAGACGCG ACGACCGTCA TGTCGAAGAT CGCGGCCGAC
GCGGGCATTC CGCTCGTCTA CGTCAACCGT GAGCCGGTGA ACGTGGACAC GCTTCCGGAA
AAGCAGGCTT TCGTTGCGTC GAATGAACAG GAATCCGGCA CGCTGCAGAC CAAGGAAATC
TGTAAGATGC TGGGCGGCAA GGGCAAAGCC GTGGTCATGA TGGGCGAGCT CTCCAACCAG
GCCGCGCGCA TGCGCACCAA GGACATTCAC GATGTCGTCG CAACCGACGA ATGCAAGGGC
ATCGAGATTG TCGAGGAGCA GACCGCGAAC TGGTCGCGCA CGCAAGGGGC GGATCTCATG
ACGAACTGGC TCTCCGCCGG CCTCGAATTC GACGCCGTGA TCTCCAACAA CGACGAGATG
GCGATCGGCG CCATTCAGGC GTTGAAGGCG GCCGGACGCT CTATGGACTC CGTCGTGATC
GGCGGCATTG ACGCAACGCA GGACGCGCTC GCAGCCATGG CCGCCGGCGA CCTTGACGTG
ACGGTTTTCC AGAATGCCGC TGGGCAGGGC AAGGGTTCGG TCGATGCCGC TCTGAAGCTC
GCCAAGGGCG AGCCTGTCGA GAAGAAGGTC TACATTCCTT TCGAGCTCGT CACGAAGGAA
AACCTGGAGC AGTATCAGGC GAAGAACTGA
 
Protein sequence
MKKFFAGTAL AVLMSTAAHA ETIGVSMALF DDNFLTVLRS GMQDYAKTLD GVELQVEDAQ 
NDVSKQQSQI QNFIAAGVDA IIVNPVDTDA TTVMSKIAAD AGIPLVYVNR EPVNVDTLPE
KQAFVASNEQ ESGTLQTKEI CKMLGGKGKA VVMMGELSNQ AARMRTKDIH DVVATDECKG
IEIVEEQTAN WSRTQGADLM TNWLSAGLEF DAVISNNDEM AIGAIQALKA AGRSMDSVVI
GGIDATQDAL AAMAAGDLDV TVFQNAAGQG KGSVDAALKL AKGEPVEKKV YIPFELVTKE
NLEQYQAKN