Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4209 |
Symbol | |
ID | 5319219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 690701 |
End bp | 691315 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640776014 |
Product | protocatechuate 3,4-dioxygenase, alpha subunit |
Protein accession | YP_001312947 |
Protein GI | 150376351 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
TIGRFAM ID | [TIGR02423] protocatechuate 3,4-dioxygenase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCAGG ATCTCGGCTA TCTTAAGGAA ACCGCGTCAC AGACTGCCGG GCCCTATGTT CATATCGGCC TGACGCCCAA TTTCTGCGGG ATTGGCGGGG TCTACGAAGC CGACCTCGGC GCTTCTATGG TCAACGACCG GACACTCGGA CAACGCATTA CCGTGACCGG CCGCGTGATC GATGGGGCCG GTATGCCGCT CAAGGACGCA CTCCTGGAAA TCTGGCAGGC GGATGCCGCC GGGCTCTATA ATTCCCCGTC CGAGAGGCGC GGCGCGGCGG ATCCGAATTT CGCCGGCTGG GGACGCTCGC CGACGGGCGC CGACGATGGC ATGTTCACCT TTGAGACGGT GAAGCCGGGC CGTGTTCCCT TCCACGACGG CCGGCTGATG GCGCCGCATA TCAGTTTCTG GATCGTCGCG CGCGGCATCA ATATCGGCCT TCACACCCGC ATGTATTTCC CCGACGAGGC GGTGGCGAAC GCCGCTGACC CGCTCCTTGC CCGCATCGAG CACCGCCACC GGGCCGAGAC GCTTGTCGCG GCGGGTCGGA CGCCTAATTA TGTTTTCGAC ATTCATCTCC AGGGCGAGAA GGAAACCGTC TTCCTGGATA TATGA
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Protein sequence | MAQDLGYLKE TASQTAGPYV HIGLTPNFCG IGGVYEADLG ASMVNDRTLG QRITVTGRVI DGAGMPLKDA LLEIWQADAA GLYNSPSERR GAADPNFAGW GRSPTGADDG MFTFETVKPG RVPFHDGRLM APHISFWIVA RGINIGLHTR MYFPDEAVAN AADPLLARIE HRHRAETLVA AGRTPNYVFD IHLQGEKETV FLDI
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