| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4204 |
|---|
| Symbol | |
|---|
| ID | 5319099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 685750 |
|---|
| End bp | 687639 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640776009 |
|---|
| Product | xylose isomerase domain-containing protein |
|---|
| Protein accession | YP_001312942 |
|---|
| Protein GI | 150376346 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases
[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
|---|
| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.460434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCT CGATTGCGAC TGTTTCGATC AGCGGCACTC TTTCGGAGAA ACTCGCCGCC
GTCGCGGCGG CAGGCTTCGA CGGGGTGGAG ATATTCGAAA ACGATTTCCT GACCTTCGAC
GGCTCGCCTG CGGAGGTCGG CCGCATTGTG CGCGATCATG GATTGAAGGT GACGCTTTTT
CAGCCTTTTC GCGATTTCGA AGGCCTGCCG GAACCGCACC GGTCACGCGC TTTCGACCGG
GCGGAGCGCA AGTTCGACGT GATGCAGGAG CTCGGGACGG AATTGATGCT GGTCTGCTCC
AGCGTCTCGC CACTCGCCTT GGGCGGTATC GACCGCGCCG CCGACGATTT CAGGGAGCTG
GGCGAAAGGG CGGCGCGGCG GAACCTGCGC GTCGGCTACG AGGCGCTTGC CTGGGGCCGC
CATGTCAACG ACCACCGGGA CGCCTGGGAA ATCGTCCGCA GGGCCGACCA CCCGAACGTC
GGGTTGATCC TCGACAGCTT TCATACGCTC GCGCGCAACA TCGACCTGCG GTCGATCCGC
TCCATTCCGG GGGACCGCAT CTTCATCGTT CAACTCGCTG ACGCGCCGCG GATCGAGATG
GACCTCCTCT ATCTCAGCCG CCACTTCCGC AATATGCCTG GGGAAGGCGA CCTTCCGCTC
GTCGATTTCA TGTCCGCCGT CGCCGCGACC GGCTATGACG GCGCGATATC GCTCGAGATC
TTCAACGATC AGTTCCGTGG CGGATCGCCC CAAGCGATCG CCGAGGATGG ACATCGTTCG
CTGGTTTACC TGATGGATCG GGTGCGGCGA CACGAGCCGG CGGCGAAGAG CGCCGAAGCA
CTGCCCGACC GGGTGGAGGT GCTGGGGGTC GAGTTCGTGG AGTTCACCGC CGATCAGACG
GAGGCGGAAG CGCTCGGCTC GCTGCTTGGG GCCATGGGTT TTCGCGCCGT CGCCTCGCAT
CGCGAGAAAG CGGTGACCCT TTGGCGACAG GGTTGCGATC ACCGAGGCAT AAACGTCGTC
ATCAATACCG AGCAGAAGGG GTTCGCTCAT TCGAGCTATC TGGTGCACGG CGCATCGGCC
TATGCGATTG GCCTGAAAGT ACCCGATGCC TCGGCCGCGG TCGAACGCGC GCGCGCCCTC
GGCGCCGAAA TATTCCTGCC GGAGTCAGGT GAAGGCGAGG GGGCGATGGC AGCGATCCGC
GGTATGGGCG GCGGCCTTAT TTATTTCGTG GACGAGATCG ACGACGTCTG GTCGCGCGAG
TTCGTCGCGC CGGGAGATGA TCGGCAGCCT GCAGCGACCC TCGTCGCCAT AGACCATGTG
GCGCAATCCA TGAAGGAAGA GCAGCTTCCG AGCTGGCTGC TTTTCTATAC ATCCATTCTT
GATGCGGACA AGCTGGCACA GGTCGATATC GTCGATCCCG CCGGGCTGGT CCGCAGCCAG
GTCGTGGAGA ATGCGAGCGG GACGCTCCGG TTGACGTTGA ACGGCGCGGA CAATCACCGC
ACGCTCGCCG GCCACTTCAT CGCAGAGAGC TTCGGCTCGG GCGTCCAGCA TGTGGCCTTC
CGCACCGACG ACATCTTCGA AGCTGCCGAA CACATGCGCC GCAGCGGCTT TCGCGCCTTG
GCGATCTCGC GCAACTACTA TGATGACATC GAAGTGCGGT TCGCGCTCGA ACCGGGTTTT
GTCGACAGGC TAAGAGACGA AAACATCCTC TATGATCGCG ATGAGGATGG CGAGTATTTC
CAGATCTATG GCCCCACCTT TGGAGAGGGC TTCTTCTTCG AGATCGTCGA GCGCCGCTCC
GGTTACCGTG GCTATGGTGC AGCCAACGCA CCTTTCCGTA TCGCCGCGCA GAAACGTTGC
CTTCGGCCGG CGGGTATGCC TGCAGAATAG
|
|---|
| Protein sequence | MKTSIATVSI SGTLSEKLAA VAAAGFDGVE IFENDFLTFD GSPAEVGRIV RDHGLKVTLF
QPFRDFEGLP EPHRSRAFDR AERKFDVMQE LGTELMLVCS SVSPLALGGI DRAADDFREL
GERAARRNLR VGYEALAWGR HVNDHRDAWE IVRRADHPNV GLILDSFHTL ARNIDLRSIR
SIPGDRIFIV QLADAPRIEM DLLYLSRHFR NMPGEGDLPL VDFMSAVAAT GYDGAISLEI
FNDQFRGGSP QAIAEDGHRS LVYLMDRVRR HEPAAKSAEA LPDRVEVLGV EFVEFTADQT
EAEALGSLLG AMGFRAVASH REKAVTLWRQ GCDHRGINVV INTEQKGFAH SSYLVHGASA
YAIGLKVPDA SAAVERARAL GAEIFLPESG EGEGAMAAIR GMGGGLIYFV DEIDDVWSRE
FVAPGDDRQP AATLVAIDHV AQSMKEEQLP SWLLFYTSIL DADKLAQVDI VDPAGLVRSQ
VVENASGTLR LTLNGADNHR TLAGHFIAES FGSGVQHVAF RTDDIFEAAE HMRRSGFRAL
AISRNYYDDI EVRFALEPGF VDRLRDENIL YDRDEDGEYF QIYGPTFGEG FFFEIVERRS
GYRGYGAANA PFRIAAQKRC LRPAGMPAE
|
|---|
| |