| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4174 |
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| Symbol | |
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| ID | 5318583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 647437 |
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| End bp | 649269 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640775979 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_001312912 |
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| Protein GI | 150376316 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.772115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0881714 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTAT TCAAGCCTCT CGGCGCGACC CCTTCGGTCA CCCAAGGGCC GCTCCCCGCG
TCCCAAAAGG TCTACAGGCC GGGCGATATC CATCCCGACA TCCGCGTGCC GATGCGCGAG
ATCACCCTGC ATCCGACCTC GGGCGAACCG CCGGTGACCG TATACGACGC CTCCGGACCC
TACACGCTTG AGAATGCCGA TATCCGCATC GACGCAGGAC TGCCGCGTCT GCGCCACGAC
TGGATCCTGA AGCGCGGCGG CGTGGAAAGT TACGAGGGCC GAGCGGTCAA GGCGGAAGAC
AACGGCTTTG CGAGCGGCGA GCGCCTCACG CCGGAATTCC CGGTGCGCAA TCAGCCGCTT
CGCGCCAAGC CGGGACAAGC GGTCACCCAG ATCGCCTTTG CCCGCGCCGG CATCATCACA
CCGGAAATGG AGTTCATCGC CATCCGCGAA AATCTCGGCC GCAAAGCCGC GAAGGAGGTA
CTCACGCGCG ATGGCGAGAG CTTCGGCGCA TCGGTCCCCG ATTTCGTCAC GCCGGAATTC
GTCCGCCAGG AGGTGGCCGC CGGCCGGGCC ATCATTCCGG CCAACATCAA CCATCCGGAG
TCGGAGCCGA TGATCATCGG CCGCAACTTT CTGGTGAAGA TCAACGCGAA TATCGGCAAT
TCCGCCGTGA CTTCCTCGAT GGCCGAGGAA GTCGAGAAGA TGGTATGGGC GACCCGCTGG
GGCGCCGATA CGGTCATGGA CCTTTCCACC GGCCGCAACA TCCACAATAT CCGCGAATGG
ATCATCCGCA ATTCGCCGGT GCCGATCGGC ACGGTACCGC TTTACCAGGC ACTGGAAAAG
GTGAACGGCA TTGCCGAGGA CCTTTCCTGG GAGGTCTTCC GCGACACGCT AATCGAACAG
GCGGAACAGG GCGTAGACTA TTTCACCATT CATGCCGGCG TCAGGCTCCA CTATATCCCG
CTCACCGTCG ATCGAGTCAC CGGCATCGTC TCGCGCGGCG GATCGATCAT GGCCAAGTGG
TGTCTGCATC ACCACCAGGA GAGCTTCCTC TACGAGCATT TCGAGGAGAT CTGCGACATC
TGCCGCGCCT ATGACGTTTC CTTTTCGCTG GGCGACGGTC TGCGGCCCGG TTCTATCGCC
GACGCCAACG ACCGGGCGCA GTTCGCCGAA CTCGAAACGC TCGGCGAGTT GACGCAGATC
GCCTGGGCCA GGGATTGCCA GGTGATGATC GAAGGCCCCG GCCACGTGCC GATGCACAAG
ATCAAGGAGA ACATGGACAA GCAGCTTGCC GTTTGCGGCG AAGCGCCTTT CTACACGCTG
GGGCCGCTGA CCACCGATAT CGCGCCGGGC TACGACCACA TCACCTCCGG CATCGGCGCG
GCGATGATCG GCTGGTTCGG CACCGCGATG CTCTGCTACG TGACGCCGAA GGAGCATCTG
GGCCTTCCCG ACCGCAACGA CGTCAAGATG GGCGTCATCA CCTACAAGAT CGCCGCGCAT
GCCGCCGATC TCGCCAAGGG GCATCCGGCC GCGCGCATCC GTGACGATGC ACTGTCGCGC
GCGCGCTTCG AGTTCCGCTG GGAGGATCAG TTCAATCTCT CGCTCGACCC GGAGACGGCG
CGGAACTTCC ATGACGAAAC GCTGCCGAAG GAGGCGCACA AGGTCGCGCA TTTCTGCTCC
ATGTGCGGTC CGAAATTCTG TTCGATGCGG ATTTCCCACG ACATCCGTGC CGAGGCGCAG
AAGGAGGGCC TTGAGGCGAT GGCAGCGAAA TACCGCGACG GCGGCGATCT CTATATGCCG
GTCGATGGGA GCGATGCGCC CACTGGAGAA TGA
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| Protein sequence | MNLFKPLGAT PSVTQGPLPA SQKVYRPGDI HPDIRVPMRE ITLHPTSGEP PVTVYDASGP
YTLENADIRI DAGLPRLRHD WILKRGGVES YEGRAVKAED NGFASGERLT PEFPVRNQPL
RAKPGQAVTQ IAFARAGIIT PEMEFIAIRE NLGRKAAKEV LTRDGESFGA SVPDFVTPEF
VRQEVAAGRA IIPANINHPE SEPMIIGRNF LVKINANIGN SAVTSSMAEE VEKMVWATRW
GADTVMDLST GRNIHNIREW IIRNSPVPIG TVPLYQALEK VNGIAEDLSW EVFRDTLIEQ
AEQGVDYFTI HAGVRLHYIP LTVDRVTGIV SRGGSIMAKW CLHHHQESFL YEHFEEICDI
CRAYDVSFSL GDGLRPGSIA DANDRAQFAE LETLGELTQI AWARDCQVMI EGPGHVPMHK
IKENMDKQLA VCGEAPFYTL GPLTTDIAPG YDHITSGIGA AMIGWFGTAM LCYVTPKEHL
GLPDRNDVKM GVITYKIAAH AADLAKGHPA ARIRDDALSR ARFEFRWEDQ FNLSLDPETA
RNFHDETLPK EAHKVAHFCS MCGPKFCSMR ISHDIRAEAQ KEGLEAMAAK YRDGGDLYMP
VDGSDAPTGE
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