| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4038 |
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| Symbol | |
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| ID | 5318338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 499771 |
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| End bp | 501405 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640775846 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001312779 |
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| Protein GI | 150376183 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02456] trehalose synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0583407 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGAGG CGCCGTGGTT CACAAGCTCG GTCATCTATG GAATCGACGT GCGAAGGTTC
GCTGACGGAA ACGGCGACGG GATCGGCGAC TTCATCGGAC TGAGGGAGCG GGTAGTCTAT
CTGAGCCACC TCGGCATCGA CTGCGTCTGG CTGTCGCCCT TCTTCAGGTC CCCCTTCGCC
GACAATGGTT ACGACGTCAG CGACTATTAC TCTGTCGATC CTGCGCTCGG GACGCTGGAC
GACTTCCTGA ACTTTCTGCA CGCTGCCGGC GAACACGGTA TTCGCGTCAT CATCGATCTC
GTCGCCAACC ACACATCGAG CGAGCATCCG TGGTTTCAGG CCGCACGGCG GGATGCGAGG
TGCCGCTTCC GCGATTACTA TGTCTGGTCC GCCAGCCCGC CGCCGGTCGC TCCGGACAAC
AAGACGGCAT TTCCCGGTGA GGAAAGCAGC GTCTGGACGT ATGACGAGCT CGCCCAGGCC
TATTATTTTC ACAAGTTTCG CCACTTCCAG CCGGACCTGA ACATCGCCAA TCCGGCGGTG
CGCGACGAAT TGCTCCGCGT GGTCGATTAC TGGCTGACAT TGGGCGTCGA CGGCTTCCGG
GTTGATGCCG CGCCCTTCGT CATCGGCGAG ACGGGCATAG AACACGCTGA TCCCAGGGAT
CCTCATGGCT TCCTGCGGGA GATGCGTGAG CTGGTCGAAG GCAGACGCCG GGATGGTCTT
CTGCTCGGCG AGGCGGACCT CTCGCCTGAA AAGCTGCGCC CCTATTTCGG TGAAGGGAAA
CTCGATCTTC TGTTCAACTT CGTTCTGAGC GCGTCTTTCG CGGCAAGCCT CGCGCGGCAG
AAGGCCGATC TCATAGGTCA GGCGCTTTCG ATAATGCCGG AGCCGCCTCC CCATCGAGGC
TGGGTCAATT TCCTTCGCAA TCTCGACGAG CTCAACCTCG ACCGCCTGCC GGAAGACATC
CAGCAGGAGA CCTTTGCCGC CTTCGCTCCG GACGAGGAGA TGCGGATCTA CGGACGCGGC
ATCAGGCGTC GGCTCGCACC GATGCTCGAG GGAAACCAGA CGAGATTGGA ACTGGCGTTC
AGCCTGCTTC TTTCTTCTCC GGGCGTGCCC CTTGTCCTCT ACGGCGACGA AATAGGCATG
GGCGAAGACC CTTCCCGCCC GGGCCGTGAG CCCGTCCGCG TCCCCATGCA GTGGAACGCT
GGCGCCAATG CCGGCTTTTC CACGGCCCAG CGCGCCAGGC TCATACAGCC AATCGTGACC
GACGGACCCT TCGCCTTCAA GCGGATCAAT GTCGAAGCAC AGCGAGAGGA CCCCCGGTCG
CTCCTCAACC GCGTCCGGGC GATGATCCTG ATGCGGCGCA GTCACAAGCT TTTTCAAAGG
GGCCGGCCGA TCGTGCTGCA TACACGGGAT CCCGCGCTGT TTGCGCTCGC CTATTCCGAC
GGCACCGAGC TGTTCGTCGT GCTGCATAAT CTAACGGAGG CCAAGCGGCG GGCGGAAGTC
GAACTGCCCG GCGCCATCGA CGCCAGGCTC AAGGATGTTT TCGGCGAAGG CGAGGTCGAG
CTCTCCGGCC AGCATCTGAC GATGGGTCTT GGCCCATTCG GCTATGCCTG GCTCCATTCG
GGAAGGAAGG ACTGA
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| Protein sequence | MNEAPWFTSS VIYGIDVRRF ADGNGDGIGD FIGLRERVVY LSHLGIDCVW LSPFFRSPFA
DNGYDVSDYY SVDPALGTLD DFLNFLHAAG EHGIRVIIDL VANHTSSEHP WFQAARRDAR
CRFRDYYVWS ASPPPVAPDN KTAFPGEESS VWTYDELAQA YYFHKFRHFQ PDLNIANPAV
RDELLRVVDY WLTLGVDGFR VDAAPFVIGE TGIEHADPRD PHGFLREMRE LVEGRRRDGL
LLGEADLSPE KLRPYFGEGK LDLLFNFVLS ASFAASLARQ KADLIGQALS IMPEPPPHRG
WVNFLRNLDE LNLDRLPEDI QQETFAAFAP DEEMRIYGRG IRRRLAPMLE GNQTRLELAF
SLLLSSPGVP LVLYGDEIGM GEDPSRPGRE PVRVPMQWNA GANAGFSTAQ RARLIQPIVT
DGPFAFKRIN VEAQREDPRS LLNRVRAMIL MRRSHKLFQR GRPIVLHTRD PALFALAYSD
GTELFVVLHN LTEAKRRAEV ELPGAIDARL KDVFGEGEVE LSGQHLTMGL GPFGYAWLHS
GRKD
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