| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3983 |
|---|
| Symbol | |
|---|
| ID | 5317909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 433860 |
|---|
| End bp | 434825 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640775791 |
|---|
| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| Protein accession | YP_001312724 |
|---|
| Protein GI | 150376128 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACA TTATCGGCAT CACCATGGGC GATCCCTGTG GCGTTGGACC GGAGATCACG
GTCAGGTCGC TTGCGGAAAT GTCGGCCGAG GACCGCGAGG CGACCCGGAT CTACGGCAAC
CTGGCGACGC TCGAGGCTGC AAGGAAGGCA CTCGGGGTTG CCGTCGACCT TGCACCACAT
GTTGTCGATC TTCCGATCGA GGGAGCGCCG CTTGCCTGGG GAAGCCTCTC CGCGGTTGCA
GGCGATGCTG CCTTTCGCTT CATCGAACGC GCGGTGCGCG ATGCCGAGAA GGGCAAGATC
GGCTGCATCG TCACGGCGCC GATCAACAAG GAGGCACTCA ACATGGCCGG CCATCATTAT
GATGGCCATA CCGGCATGCT GCGCAGCCTG ACCGGGTCGA GCGCCGCCTA TATGCTCCTT
GCCTCCGAGC GTCTCAAGGT GATTCACGTG TCCACCCATG TCTCGCTCAA GGAGGCGATC
AGCCGCGCCA CGACCGAGCG GGTCCTTGCC ACGATCCGGG CCGGCAACGC GCATCTGAAG
CGCATTGGCT ATGAGCGCCC GCGGATCGCG GTCGCCGGCA TCAACCCCCA TTGTGGCGAG
AACGGCCTGT TCGGCACGGA AGACGACGAT CAGATCGGCC CCGCGGTGGC GGCGGCCCGT
GAAGAAGGCA TCGACGTGCA GGGGCCGATC TCGGCCGACA CCGTGTTCCA CCGCGCCTAT
TCGGGAAGCT TCGATCTGGT CGTTGCGCAA TATCACGATC AGGGTCACAT CCCGATCAAG
CTCGTCGCCT TCGATACTGC GGTGAATGTT TCCGTGGACC TGCCCATCGA CCGCACCTCC
GTCGATCACG GCACCGCCTT CGACATTGCC GGAAAGGGCA TCGCAAATCA CGGCAACCTG
AATTCCGCGA TCGCCTATGC CCGCAAACTC GTGGCCGGCA AGGCAAGCAG AAAGGCAGCG
TCATGA
|
|---|
| Protein sequence | MSNIIGITMG DPCGVGPEIT VRSLAEMSAE DREATRIYGN LATLEAARKA LGVAVDLAPH
VVDLPIEGAP LAWGSLSAVA GDAAFRFIER AVRDAEKGKI GCIVTAPINK EALNMAGHHY
DGHTGMLRSL TGSSAAYMLL ASERLKVIHV STHVSLKEAI SRATTERVLA TIRAGNAHLK
RIGYERPRIA VAGINPHCGE NGLFGTEDDD QIGPAVAAAR EEGIDVQGPI SADTVFHRAY
SGSFDLVVAQ YHDQGHIPIK LVAFDTAVNV SVDLPIDRTS VDHGTAFDIA GKGIANHGNL
NSAIAYARKL VAGKASRKAA S
|
|---|
| |