Gene Smed_3904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3904 
Symbol 
ID5318217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp357970 
End bp358473 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content60% 
IMG OID640775714 
Producthypothetical protein 
Protein accessionYP_001312647 
Protein GI150376051 
COG category[S] Function unknown 
COG ID[COG3652] Predicted outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0471754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACAG TCAACATCAC CCTTGCAGCA ATTATGCTGT GCTTCGTCTC GATTCAGGCG 
GTCAGCGCTC AGACAAAGCC AACGGAGCCT CAGGAGTTCG CGCGGAAAAT GTCGATGTCG
AACCTTTTCG AGCTGAAATC GGCGGAACTG GCGCGGCAGC GGGGCGAGGG ACGCCAGGTG
CTGGAGTTCG CCGAGCGGAT GCTCGCTGAT CATGCGCGTG CCGGCAAGGA ACTGGCCGAA
GCAGCACGGA AGGACGGCGT GGAGCTTTCC CAGTCGCTCG ACAAGGCCGG GCAGGAGAGG
CTTGCTGCCT TGCAGGCGCT AAACGGCGCG ACCTTCGATC CGGCTTATCT GTCGTCGCAG
GTTACTGCGC ATGAGGATGC GCTGGAACTT CTCAAGACCT ATGCTGAGCG AGGCGAGGCC
GGGGCCCTGA AAACGTTTGC CGAATCCGCA TATCCGACCG TCAGAACGCA TTTGCTCCAG
GTTCAGTCGA TTACATCTCC GTAA
 
Protein sequence
MRTVNITLAA IMLCFVSIQA VSAQTKPTEP QEFARKMSMS NLFELKSAEL ARQRGEGRQV 
LEFAERMLAD HARAGKELAE AARKDGVELS QSLDKAGQER LAALQALNGA TFDPAYLSSQ
VTAHEDALEL LKTYAERGEA GALKTFAESA YPTVRTHLLQ VQSITSP