| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3888 |
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| Symbol | |
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| ID | 5318682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 345706 |
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| End bp | 346827 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640775700 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_001312633 |
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| Protein GI | 150376037 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1088] dTDP-D-glucose 4,6-dehydratase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00197458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCC GGACCGTCGA AAAAAGTCGG CATCTGGCGA CGCCTGCGCT CTCCGGAAAG
GCGGGGCCGA TCCTTGTCGT TGGAGGCAGC GGCTTCGTCG GGAGCAATCT CGCCGACAGC
TTTCTCCGTG ACGGCGAGCA CGTGATCGTT CTCGACAATC TCAGCCGCCC GGGCGTCGAG
AGAAACCTCG AATGGCTGGT GGAGAGCCAC GGGCGCGCCG TCGAGGCCGT CACCGCCGAC
ATCCGCGATC TCGCCGCAAT CCAACCTGCC TTCAGGAATG CCAAGGCCGT ATTCCATTTT
GCGGCTCAGA CGGCGGTGAC CACAAGTCTC CAGCAGCCGA CCGAGGATTT CGAGACGAAT
GCGCGTGGCA CGCTCAACGT GCTCGAAGCC GCACGTCTGG CTGGGCGCAG CTCGCCCGTG
ATCTTCGCCA GCACCAACAA GGTCTATGGC GCGCTCGAGC ACATGGAAAT GAGAGACGTG
CAGGGCCGCT ACATGCCGGT CGACGAGGCG ACGCGCGCGC ATGGCGTCGG CGAGGCGCAA
CCGCTCGATT TCTGCACGCC CTATGGCTGT TCGAAGGGCG TTGCCGATCA GTATGTGCTG
GACTATGCCC GCTCCTTTGG CTTGCCGACC GCCGTTCTCA GAATGAGTTG CGTCTATGGC
CCGAGGCAGT TCGGCACAGA GGATCAGGGC TGGGTAGCGC ACTTCCTCAT ACGGGCGCTC
GCCGGCGAGC CGATCTCGAT CTATGGCGAC GGCAAGCAGG TCCGCGACAT CCTCCATGTC
ACCGATGCGG TCGCCGCTTA TAGAGCGGTT CTTAAAGCGA TCGACGGTCT GAAGGGTCGC
GCTTTCAATT TGGGAGGCGG ACCCGACAAT GCCGTCAGCA TTGTCGAGGT GCTGAACGAG
ATCGAGATCT TGACGGGCCG TCGGCTCTCT ACCGGGAAAA GCGACTGGCG CGCCGGCGAC
CAGCTGTATT TTGTGGCCGA TACGCGCGCG ATCGCCGATG CGGTCGGCTG GAGGGCGGGA
ATGGCTTGGC GCGAGGGGCT GCGCAATCTT TACGCCTGGC TTGTCGAAGA TCGGGTCGGC
GTCGGAAATA TCCGGCGTCA ACAGCGGAGG GTCCCTGCAT GA
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| Protein sequence | MSGRTVEKSR HLATPALSGK AGPILVVGGS GFVGSNLADS FLRDGEHVIV LDNLSRPGVE
RNLEWLVESH GRAVEAVTAD IRDLAAIQPA FRNAKAVFHF AAQTAVTTSL QQPTEDFETN
ARGTLNVLEA ARLAGRSSPV IFASTNKVYG ALEHMEMRDV QGRYMPVDEA TRAHGVGEAQ
PLDFCTPYGC SKGVADQYVL DYARSFGLPT AVLRMSCVYG PRQFGTEDQG WVAHFLIRAL
AGEPISIYGD GKQVRDILHV TDAVAAYRAV LKAIDGLKGR AFNLGGGPDN AVSIVEVLNE
IEILTGRRLS TGKSDWRAGD QLYFVADTRA IADAVGWRAG MAWREGLRNL YAWLVEDRVG
VGNIRRQQRR VPA
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