Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3839 |
Symbol | |
ID | 5318567 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 294180 |
End bp | 295163 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640775651 |
Product | TRAP transporter solute receptor TAXI family protein |
Protein accession | YP_001312584 |
Protein GI | 150375988 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0135422 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACATG AACGGATTAC GTTGCGAGGA GCGCAGATCG CCGCCCTCTC GGCTGCGATG TTTTTTTCGG GCAGCGCGGT GGCGCAGCAG AAATTCGTGA CGATCGGCAC TGGCGGCGTC ACCGGCGTCT ATTATGCAGC GGGCGGCGCC ATCTGCCGGC TCCTGAACAA GGACCGCAAG ACGCACGGAA TTCGCTGTTC GGTCGAATCC ACCGGTGGAT CGGCGTTCAA CGTGAATACG ATCAAGGAAG GCGAGCTCGA TTTCGGCACG ACACAGTCCG ACGTCCAGTA CAACGCCATG AAGGGCGAGG AATCGTTCAA GGAAGGCGGC GCGCATACCG ACCTCAGAGC GGTATTCTCG ATCCATCCCG AACCATTCAC CGTACTGGCT CATCCGAATG CCGGCGTGAC CAGGTTCGAG GATTTCAAGG GCAAGCGCTT CAATGTGGGC AATCCGGGCT CCGGCACGCG CGCTTCGATG GAACGTCTGC TCGGCGCGAT GGGCTGGACG CTGGCCGACT TCTCCCTCGC ATCCGAGCTC AAGGCCGATG AGCACGGGCC GGCGCTTTGC GACGGCAAGA TCGACGGCTT TTTCTACGGC GTCGGACATC CCTCGGCCAA TATCCAGGAT CCGACGACCA CATGCGGCGC AAAGCTGGTG CCGCTGACCG GCGAAGTCGT CGACAAACTG GTCGCCGAAA ACCCCTATTA TGCAAAGGCG ACCATTCCCG GCGGCCTCTA CAACGGCAAT CCGGAAGACA CGGAAACGTT TGGCGTTCTT GCCACGCTGG TCACATCGGC CAATGTACCG GAAGAGAGCG TTTACGAACT CACGAAAGCG GTTTTCGAGA ACTTCGACGA GTTCAAGTCG CTGCACCCGG CCTTCGCCAA TCTCGATCCC GCCAAGATGA TCAAGGATGG CCTCTCGGCG CCGCTGCACC CCGGCGCGGA AAGATACTAC AAGGAAAAGG GCTGGCTGAA GTGA
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Protein sequence | MRHERITLRG AQIAALSAAM FFSGSAVAQQ KFVTIGTGGV TGVYYAAGGA ICRLLNKDRK THGIRCSVES TGGSAFNVNT IKEGELDFGT TQSDVQYNAM KGEESFKEGG AHTDLRAVFS IHPEPFTVLA HPNAGVTRFE DFKGKRFNVG NPGSGTRASM ERLLGAMGWT LADFSLASEL KADEHGPALC DGKIDGFFYG VGHPSANIQD PTTTCGAKLV PLTGEVVDKL VAENPYYAKA TIPGGLYNGN PEDTETFGVL ATLVTSANVP EESVYELTKA VFENFDEFKS LHPAFANLDP AKMIKDGLSA PLHPGAERYY KEKGWLK
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