| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3825 |
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| Symbol | |
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| ID | 5318017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 279700 |
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| End bp | 281787 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640775637 |
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| Product | Glycerone kinase |
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| Protein accession | YP_001312570 |
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| Protein GI | 150375974 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG2376] Dihydroxyacetone kinase
[COG2390] Transcriptional regulator, contains sigma factor-related N-terminal domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0322545 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGA AGACACCCTC ACCGCGCAAA GGCGGAGCCA ACCGAGGCGG CACGATGGAC
GGCTCGGACG CGATCCCCTT GCGTTACGGT GACGATCCTT ATGTCTGGGC CTGCTGGCTT
TATTACGAAG ACGGCATGAC GCAAAGCGAG ATCGCGGAGG CGATGGGTGT GTCGCGCGCG
ACGGTCAACA GCTATCTGGC CGACGCCCGT GAAAAGGGCA TCGTCAACAT TTCGATCGAG
CCGGCGCGCC TGGCGTCGCT CACGGTCGCA CAGGAACTGA AGCGGCATTT CGGCCTGACC
GATTGCCTCG TGGTTCCGAG CGACGACAAT GCGCGTCCGC TGATCGATCG CCTCGGGGCG
GCAGGAGCGC AGGCGCTGCC GAAGCTCCTG AAATCCGGCG ACACGCTTGC CGTCGCCTGG
GGCCGCACCG TTCTTTCGGT TGGCGAACAC GCCGGAATCA CGTCTCTTCA GGACATGACC
GTGGTTCAGG CGACAGGAGG CACCACGGCG TCCTTTCCGT ATACGCCGGA ACTTTGCGCC
TCTGCCGTGG CGCGGGCAAT CGCCGCCCGC TGCGTCAATA TCACCGCGCC GGCTGTGGTC
AGGTCGCCCG AGCTCCTGCA GATGCTTCTG GACGAACCCC TTGTGCGGGA ACAGTTTGCG
ACCTTGGCGC GGTCAAACCG GGTGCTCTTC GGCATATCGT CGCTTAGGCC GAATTCCACC
ATCCACACCA GCGGCTTCTT CGAATCGGTT TCGTTACAGG ACTATCTCGC GGCCGGCGCG
GTCGGCGTCG TCGCCGGCCG CTTCATCGAC GAGCGCGGCC GCCCGGTTGC GGGGCCGCTC
GACCACCGGA CGGTGGGCAT CTCCCTTGAC CTGCTTCGCA GGATCGGCAC GCGCATCGCA
GTGGCCGGCG GCTTTGACAA GGTTCCGGCG CTGCTGGCGG CGTTGCGCGG TGGCTATGTC
AACGTGCTGA TCACGGACGC TGCGACAGGT CACGGTATCT TGCGCGCAGA CGGCGGCACG
GCACTCGACA GCAGGCTTTC GCACCGTCCA AAACTCGTGC AGACGCTGAG CACCTACCGC
AGCCATGTCA AGAAATTCCT CAACAATCCG AACGAGGTTG TCGAAGAGAT GCTCGACGGC
GTCGTCAAAG CGCACGAGAA ATATCTTAAG CCGATCAACG GATCGCATCG AGCGCTCGCC
GCTCGCAGCG GGCCGCGGCC GGAAAAGGTC GGCCTCGTCA TCGGCGGAGG CACGGGTCAC
GAACCGTGCT TCCTCGGCTA TGTAGGCAAG GGTCTTGCCG ATGCGGTTGC CGTCGGTAAC
ATCTTTTCCT CGCCGCCGCC CGATCCGATC GTACAATGCG CCGAAGCAGC GTCCGGTGGA
GCAGGTGTGC TCTTCGTCTA CGGCAATTAC GCCGGCGACG TGATGAATTT CGAGATGGCC
GCCGAGATCG CCGAAGAAAA AGGCATTCGC GTGCAGACCG TCCTGACGAC CGACGACATT
GCATCCTCGC CGATCGAGGA CCGCGAAGGC CGACGCGGCG TCGCCGGCAA CTTCTTCATC
TTCAAGATCG CCGGCGCGGC TTGCGACCGT GGTCTTTCGC TGGAAGCCTG CGCGGCGGTT
ACGCGCAAGG CGAACCTGCG CACCTACACG ATGGGGGTCG CGCTCGAGCC CGGCGCAATG
CCGCAGACGC GCCGGCACAA TTTCGAGATA GGCCCGGAAG ACATGGAGGT CGGTATGGGA
ATCCACGGCG AGCCGGGCGT GACACGCGAG CGCATCAGAT CGGCGGACGA GATAACCGAC
AGCGTCATGG ACCGCGTCTT CAACGAGATG AAGGCAGCAC CCGGCGACCG CGTTGCCGTG
CTCGTCAATT CCTTTGGAGC GACGCCCCTG ATGGAACTCT ACATCCTGTT TCGGCGGGTT
CAGCAGCGCC TGGCGGCAAA AGACATTCTG ATCGAAGCCA ATTGGATCGG ACACTACTGC
ACCTCGCTGG ATATGGTCGG TGCTTCGATC ACCATCCTCC ATCTCGATCA GGAGCTGTCA
GAACTGCTTC ATCACCCTTG CGAAACGGCA TTCCTGAAGA TCAACTAG
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| Protein sequence | MTMKTPSPRK GGANRGGTMD GSDAIPLRYG DDPYVWACWL YYEDGMTQSE IAEAMGVSRA
TVNSYLADAR EKGIVNISIE PARLASLTVA QELKRHFGLT DCLVVPSDDN ARPLIDRLGA
AGAQALPKLL KSGDTLAVAW GRTVLSVGEH AGITSLQDMT VVQATGGTTA SFPYTPELCA
SAVARAIAAR CVNITAPAVV RSPELLQMLL DEPLVREQFA TLARSNRVLF GISSLRPNST
IHTSGFFESV SLQDYLAAGA VGVVAGRFID ERGRPVAGPL DHRTVGISLD LLRRIGTRIA
VAGGFDKVPA LLAALRGGYV NVLITDAATG HGILRADGGT ALDSRLSHRP KLVQTLSTYR
SHVKKFLNNP NEVVEEMLDG VVKAHEKYLK PINGSHRALA ARSGPRPEKV GLVIGGGTGH
EPCFLGYVGK GLADAVAVGN IFSSPPPDPI VQCAEAASGG AGVLFVYGNY AGDVMNFEMA
AEIAEEKGIR VQTVLTTDDI ASSPIEDREG RRGVAGNFFI FKIAGAACDR GLSLEACAAV
TRKANLRTYT MGVALEPGAM PQTRRHNFEI GPEDMEVGMG IHGEPGVTRE RIRSADEITD
SVMDRVFNEM KAAPGDRVAV LVNSFGATPL MELYILFRRV QQRLAAKDIL IEANWIGHYC
TSLDMVGASI TILHLDQELS ELLHHPCETA FLKIN
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