| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1905 |
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| Symbol | |
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| ID | 5297537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 1891340 |
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| End bp | 1892773 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640770171 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_001307122 |
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| Protein GI | 150021768 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGAAA ATAAAGTCAG AGGAATAATA ACTTTGGTAG TAATTGCACT TGCCTTCTTA
TCTTTACTTT GGCCATCTTC AAAAGGTTAT CAAGGTGTTT TAAGTATTTT TAACAGGATA
AAATTGGGTT TGGATATTAG TGGTGGTGCA AGAATAGAGT ACAGAGTTGA CATTGATAAG
TCTGTAGAAA ATCCTTCTAA AGTTGCGGAA GATGTATGGA CTGTTTTGAG AAATAGACTT
GATATGGCTA ATTATACAGA AGCAGTGGTT AAGCAAACTT TTAGAGAAGA AAATACTTTT
ATTATAGTTG AAATTCCAGG GGCAACTGAT ACTGCGCAAG CAGAGCAATT AATTGGTTCT
ACGGGGTTGC TTTGGTTTGG GCAAGTTGTA GATGAAACAA CGGGAAATCC CAATATAGAT
CCTGAATTAG TAAATGAAGC CAAAAGGGAG AAAGCACAAT GGTTGCTTGA TAGAGAAGGA
AAGAAATGGT ATCTAGTAAA AAAAGAAATT GCAAATATTT CAAATTTAAA ACTTGTCTCT
CCAAAAATTG TTGAAGCAAT ACCACAAGTT GATAGGAATA ATGTAGCTGG TTATGTTGTA
ACATTCAAAA TGGATAAAGA ATACGTTGAT ATTTTCAGGA GGATAACGGA AAAACTTTAT
GTTCCTGAAG AGCTTTTAAA TCAAGGGGGA GTGGCTTATT CCCAAGCAAT GAAAAAAAGA
TTGGCAATTG TCTTGGATAA TAGAGTGCAA TTTGCAGGTT TTGTTACGGC AAAGATTACA
GATGGGAGTG CATTGATAAA AGGGAATTTT ACGTTGGATG AAGCAAAGCA ATTAGCGGCT
ATTTTGAAGA GTGGAGCTCT TCCAGCAAGG CTTGAAAAGG TCTCATCTGG ATGGGTAGCA
CCATTGCTTG GAAAAGATAT AATTGAAGCT TCAATAAAAG CTGGAATTGT TGGAGTTGTA
ATAGTTTTGA TTTATATGAT TGTATTTTAT GGTGTTATGG GAATTGTTGC AGATATTGCT
TTGTTGTATA ATACATTTTT GTTGTTAGGT GTACTTGCTA CAACTGGTTC CATATTGACA
TTACCAGGTA TTGCAGGTAT TATTTTGACA ATTGGTACAA CTGTTGACGG AAATATCATT
ATATACGAAA GAATTAAAGA AGAAATTAGA AGAGGTAGTT CGGTAAAAGC TGCAATTTCC
ACGGCATTTT CAAAATCGTT TATTACGCTT TTTGACGCTA ATCTTACAAC TATAATTGCG
GGTCTTTTCT TATATTACTT TGGAACGGGA ACAGTCAAAG GTTTTGCAAT TACATTGATT
ATAGGTGTTT TGGGTAGTTT ATTTGTCAAT TTAGTTGTTT CAAGATTTTT CTTAGATTTA
TTCTCATCTG GAATTAAGGT TAGGAGAACA AGCAAGGGAG GTGCCAGGGC ATGA
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| Protein sequence | MKENKVRGII TLVVIALAFL SLLWPSSKGY QGVLSIFNRI KLGLDISGGA RIEYRVDIDK
SVENPSKVAE DVWTVLRNRL DMANYTEAVV KQTFREENTF IIVEIPGATD TAQAEQLIGS
TGLLWFGQVV DETTGNPNID PELVNEAKRE KAQWLLDREG KKWYLVKKEI ANISNLKLVS
PKIVEAIPQV DRNNVAGYVV TFKMDKEYVD IFRRITEKLY VPEELLNQGG VAYSQAMKKR
LAIVLDNRVQ FAGFVTAKIT DGSALIKGNF TLDEAKQLAA ILKSGALPAR LEKVSSGWVA
PLLGKDIIEA SIKAGIVGVV IVLIYMIVFY GVMGIVADIA LLYNTFLLLG VLATTGSILT
LPGIAGIILT IGTTVDGNII IYERIKEEIR RGSSVKAAIS TAFSKSFITL FDANLTTIIA
GLFLYYFGTG TVKGFAITLI IGVLGSLFVN LVVSRFFLDL FSSGIKVRRT SKGGARA
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