| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1877 |
|---|
| Symbol | |
|---|
| ID | 5297476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1861674 |
|---|
| End bp | 1862369 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640770145 |
|---|
| Product | tetrahydrodipicolinate succinyltransferase domain-containing protein |
|---|
| Protein accession | YP_001307096 |
|---|
| Protein GI | 150021742 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
[TIGR03532] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACTC AGGAAATTAT AAACTTAATA GCAAATTCCA AAAAAAGGAC AATTGCAAAG
GCATATGTTT CGGGGAATCT TAAAAACATC AAACTTGAAA ATGTTGAGTT TGTCGGCAAT
GAATTATTTG GTGTTCTATT TGGTGACTTA AAAGATATAG AAAATACAAT AAATAAAAAT
GATATCAAAA ACTACAAAAT AGAAATTCTT GCTAAAAATT CCGCCATTCC ACTTGCTGAT
ATAAAAAAAT ATAATGCACG CATCGAACCA GGTGCAATAA TTCGCGATAT GGTTGAAATT
GGCGATGGTG CTGTAATCAT GATGGGTGCA GTTATAAACA TTGGTGCAGT AATTGGTGAA
AAAACAATGA TCGATATGAA TACAGTCATT GGTGGTAGGG CAATTATTGG GAAAAATTGT
CATATTGGTG CAGGTTCTGT AATTGCAGGC GTCATAGAAC CACCTAGTGC AAAACCTGTA
ATGATAAAAG ATAACGTAAT GGTTGGTGCA AATGCCGTTA TTTTGGAAGG CGTAGAAATT
GGGGAACATA GTGTAATTGC AGCAGGTGCT GTTGTTATAG AAGATATCCC ACCATACTCA
GTTGTTGCAG GTGTTCCCGC AAAAGTTATT AAAAAAGTAG ATAAAAAAAC GGAATCAAAA
ACCCAGATAA TTGATAGCTT AAGAAATTTA AAATAA
|
|---|
| Protein sequence | MNTQEIINLI ANSKKRTIAK AYVSGNLKNI KLENVEFVGN ELFGVLFGDL KDIENTINKN
DIKNYKIEIL AKNSAIPLAD IKKYNARIEP GAIIRDMVEI GDGAVIMMGA VINIGAVIGE
KTMIDMNTVI GGRAIIGKNC HIGAGSVIAG VIEPPSAKPV MIKDNVMVGA NAVILEGVEI
GEHSVIAAGA VVIEDIPPYS VVAGVPAKVI KKVDKKTESK TQIIDSLRNL K
|
|---|
| |