Gene Tmel_1651 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1651 
Symbol 
ID5297592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand+ 
Start bp1640446 
End bp1641432 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content27% 
IMG OID640769928 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001306880 
Protein GI150021526 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.730832 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAAACTT TATATATTTT TACTGATGGT GAATTAAGAA GGAAAAATAA TGCTTTATAT 
TTAAAACCCA AAGATAATAA TATGAAGCCA CTTTTTGTTC CGTTGAAAAG TGTTTCATCT 
TTGATGATAT TTTCAGAAGT TAGTATGAAT AAAAGATTTC TTGACCTTTT ATCTAAAGAA 
GGTATTCCTG CGTTTTTTTA CGGATATTAT GAAAATTTTA TTGGTACATT TTATCCAAAA 
CAGGTTAATA AAACAGGTGA GATGTTAGTT TTACAATATA AACACTACGA GGATATTAAT 
AAGCGTTTAA AAATTGCTAG TGAAATTCTA AATGCTGCGG TTGATAATAT GGTTAATTTA 
TTGAGTAGTT TTAAAGAAAT AACACATACG GAGATAGAAT ATATAACAAA ATTGAAAGCA 
TCTTTTAAAA AGCAGCGTAA TATTCCTGCG TTGATGGCAA TAGAAGGAAA TATTAGAAAG 
GTATATTATT CTGCTATTGG AAAAATAGTA GGAAAAAAGG ACTTTGAATT TGTGGAAAGA 
ACTAAACAAC CACCTAAGGA TAAAATTAAT GCACTAATAA GTTTTGGAAA TGTTGTTTTG 
TACAATATTG TACTGGCAGA AATATACAAA ACTTCATTAG AACCTCGAAT AAGTTTTTTA 
CATGAACCAA ATAAAAGGAA CTTTTCCTTG CAGTTGGATA TTTCGGAAAT TTTTAAACCA 
ATAGTGGTTG ACAAAGTAGT TTTAAAATTG ATAAATAATG GCATGATAAA AAAGAAAGAT 
TTTGAAAATG TAAAAGATGG AGTATATCTT TCAAAAGAAG GCAAAAAGAA ATTTGTTCAA 
GAATTGGAAA ATAGATTGGA AAAGAAGATT TTTTTGTATA AAGATCAAAG AGTAACTTTA 
AAAACAGTTA TTTTACATGA ATGTTATAAA TTAATCAGGC ATCTAAAAGG AGAAGAGGAA 
TATAAAGGAT TTGTATTAAA GGAGTGA
 
Protein sequence
METLYIFTDG ELRRKNNALY LKPKDNNMKP LFVPLKSVSS LMIFSEVSMN KRFLDLLSKE 
GIPAFFYGYY ENFIGTFYPK QVNKTGEMLV LQYKHYEDIN KRLKIASEIL NAAVDNMVNL 
LSSFKEITHT EIEYITKLKA SFKKQRNIPA LMAIEGNIRK VYYSAIGKIV GKKDFEFVER 
TKQPPKDKIN ALISFGNVVL YNIVLAEIYK TSLEPRISFL HEPNKRNFSL QLDISEIFKP 
IVVDKVVLKL INNGMIKKKD FENVKDGVYL SKEGKKKFVQ ELENRLEKKI FLYKDQRVTL 
KTVILHECYK LIRHLKGEEE YKGFVLKE