| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1601 |
|---|
| Symbol | |
|---|
| ID | 5297734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 1587637 |
|---|
| End bp | 1589385 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640769878 |
|---|
| Product | hydrogenase, Fe-only |
|---|
| Protein accession | YP_001306830 |
|---|
| Protein GI | 150021476 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4624] Iron only hydrogenase large subunit, C-terminal domain |
|---|
| TIGRFAM ID | [TIGR02512] hydrogenases, Fe-only |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAA TTTTCCTTAA TGGACGTGAA TATGAAGTTC CTGATGGTTT AACCGTCCTT
GAAGCTGCTG AGAAGCTAGG TGTAAAGATC CCAACACTTT GTCACCATCC AGAGCTTGAA
CCAATTGGAG CATGTAGGGT TTGCGTTGTA GAAATTGAAG GAGCAAGAAC CTTACAACCT
GCATGTACGA CAAAAATAAC AGATGGAATG AAAATCAAAA CGAACTCAGA TAGAGTTGAA
AATGCAGTTA AATTTAATCT TTCTCTAATA ATGGCAAACC ATCCAAATGA TTGTATGTAT
TGTGAAGCTG ATCAAAGATG TGAATTAAAA AAATTGGTCC ATAAATACGA TGTAAGACCT
ATTTTTAATC CCACAGATTT ATCAGATATA TTTGATGATA GTAGTCCATC TATCCAAAGG
GATCTTTCAA GATGTATTAA ATGTCAAAGA TGCGTAAGGG TATGTAGCGA AATCCAAGGT
ATGAACATCT ACTCAATGGT TGAAAGGGGC TACAAAACTG TTCCACAAAC CGCATTTGAT
CAACCTGTTT ATGAAACAGA ATGTATATCA TGTGGTCAAT GTGCTTACCT ATGTCCAGTT
GGTGCAATTT ATGAAACCCC AGATTGGAAA AAAGTGTTAA AACTATTAGA AAGAAAGGAA
AAGATTTTGG TTGCTCAAAC TGCTCCATCA GTTAGAGTTG CTTTAGGAGA AGAATTTGGT
ATGGAGCCAG GTTCAGTAAG CACGGGAAAA ATGGTTGCAT CACTAAAAAA ATTAGGCTTC
GATTACGTTT TTGATACAAA TTTTGCGGCT GACCTTACAA TTGTAGAAGA AGGAACTGAA
TTAGTTGAAA GATTCAAAGA AGGCGGTCCA TTCCCAATGT TTACAAGTTG TTGCCCTGGT
TGGATAAACC TTCTTGAAAA AATATATCCC GAATTTATTC CAAACGTTTC AAGCGCAAAA
TCTCCACAAC AAATGATGAG TTCTGTTGTA AAAACATACT TTGCAAAAAA AATAGGTGTT
GACCCGGAAG ATATAATTAT GGTATCAGTT ATGCCTTGTA CAGCAAAAAA AGACGAAATA
AAAAGACCAC AACAAAAGAT TAAACTAGAA GATGGCAGAG AAATTCAAAC TACAGATTAT
GTAATAACAA CCAGAGAACT TGCTAAACTT ATTAAACTCA AGGAAATTAA TTTTGCTGGT
CTTCAAGATG CGGAATTTGA CAATCCTCTT GGAACATCGA CTGGTGCCGC TGCAATATTT
GGTGTTACCG GCGGTGTTAT GGAAGCAGCC CTTAGAACCG CTTATGAAGT CATCACAAAT
AAAGAATTAC CAAAATTAGA ATTCACCGCA GTAAGAGGAT TAGATGGAAT AAGAGAAGCT
GAGATTGACA TAGAAGGAAA GAAGGTAAAG GTTGCAATAG CTCATGGAAC CGCAAATGTA
AGAAAATTAT TAGATGATAT TAGAGATGGA AAGCGATACT ATGACTTCAT TGAGATTATG
GCATGTCCCG GTGGTTGTAT TGGTGGTGGA GGGCAACCAA AAAGCCTTGA TCCAGATATT
CTTAAAAAAC GTGCAATGGC AATATACTCA ATTGATGAGC TTAGTACACT TAGAAAATCT
CACGAAAACC CAGATATTCA AAAACTATAC GAAGAATTTC TTGAAAAACC AAATAGCCAT
ATTGCTCACG AGCTATTACA CACATATTAC ACAGATAGAA CAGTAAAAAG CAAAGCAATT
GTTGAGTAA
|
|---|
| Protein sequence | MAKIFLNGRE YEVPDGLTVL EAAEKLGVKI PTLCHHPELE PIGACRVCVV EIEGARTLQP
ACTTKITDGM KIKTNSDRVE NAVKFNLSLI MANHPNDCMY CEADQRCELK KLVHKYDVRP
IFNPTDLSDI FDDSSPSIQR DLSRCIKCQR CVRVCSEIQG MNIYSMVERG YKTVPQTAFD
QPVYETECIS CGQCAYLCPV GAIYETPDWK KVLKLLERKE KILVAQTAPS VRVALGEEFG
MEPGSVSTGK MVASLKKLGF DYVFDTNFAA DLTIVEEGTE LVERFKEGGP FPMFTSCCPG
WINLLEKIYP EFIPNVSSAK SPQQMMSSVV KTYFAKKIGV DPEDIIMVSV MPCTAKKDEI
KRPQQKIKLE DGREIQTTDY VITTRELAKL IKLKEINFAG LQDAEFDNPL GTSTGAAAIF
GVTGGVMEAA LRTAYEVITN KELPKLEFTA VRGLDGIREA EIDIEGKKVK VAIAHGTANV
RKLLDDIRDG KRYYDFIEIM ACPGGCIGGG GQPKSLDPDI LKKRAMAIYS IDELSTLRKS
HENPDIQKLY EEFLEKPNSH IAHELLHTYY TDRTVKSKAI VE
|
|---|
| |